Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27230 268 / 2e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G40830 254 / 1e-83 ATRAD3, ATATR S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G05390 162 / 8e-48 unknown protein AT4G01240 150 / 3e-42 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29790 137 / 6e-39 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G19430 48 / 2e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G51070 47 / 4e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G34300 45 / 1e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G06050 45 / 2e-05 Putative methyltransferase family protein (.1) AT3G23300 45 / 2e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024318 [exp] 396 / 1e-139 AT3G27230 581 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10012420 [exp] 358 / 6e-127 AT3G27230 320 / 7e-109 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10034506 [exp] 295 / 8e-100 AT3G27230 599 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033164 [exp] 295 / 8e-98 AT3G27230 451 / 3e-155 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10007588 [exp] 167 / 5e-50 AT5G40830 232 / 6e-72 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10007385 [exp] 167 / 5e-50 AT5G40830 277 / 1e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020803 [exp] 167 / 5e-50 AT5G40830 282 / 1e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10029907 [exp] 157 / 5e-46 AT3G05390 697 / 0.0 unknown protein Lus10004494 [exp] 157 / 8e-46 AT3G05390 699 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G024800 [exp] 300 / 1e-101 AT3G27230 600 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G236600 [exp] 295 / 6e-100 AT3G27230 634 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G135100 [exp] 167 / 2e-50 AT3G05390 278 / 3e-89 unknown protein Potri.013G019400 [exp] 166 / 5e-49 AT3G05390 753 / 0.0 unknown protein Potri.004G083800 [exp] 163 / 3e-48 AT3G05390 278 / 3e-89 unknown protein Potri.001G352700 [exp] 156 / 4e-46 AT1G29790 437 / 2e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.011G079000 [exp] 155 / 7e-46 AT1G29790 439 / 2e-154 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.004G231100 [exp] 155 / 4e-45 AT3G05390 287 / 2e-92 unknown protein Potri.002G165300 [exp] 152 / 4e-44 AT4G01240 662 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.004G116900 [exp] 149 / 9e-43 AT4G01240 388 / 7e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10024319 pacid=23174985 polypeptide=Lus10024319 locus=Lus10024319.g ID=Lus10024319.BGIv1.0 annot-version=v1.0 ATGACGAATGTTTGTTATGTGAGTAAGAAGAAACTACTAAGTGAAGAATTTGATTTAGGTAATGAGAATCATAAATATGTTAAGGGTAGAGGGAAGAATG ATTTCTTGGCTGATGATGTTTTGGGATTGGCAAGTGGTGGGATTAGGATAGGGCTTGACATTGGTACTGCTTCTGGTGGGACATTTGCTGCTAGAATGGC TCAAAGGAATGTCACTGTGATTACAAACACACTGAATTTGGATGCTCCTTTTAATGAGTTTGTTGCTGCCAGAGGCCTATTTCCTCTTTACTTGAGCTTG GACCATAGGTTTCCCTTCTACGACAATGTCTTCGATTTAATTCATGCTGCTGCATTTGATTTCGGGACCAAGCCTGAGAAGCTAGAGTTCTTGATGTTTG ACATTGATCGGATACTGAGAGCTGGGGGCTTGTTTTGGCTGGATAACTTGTACTGTGCCAATGATGACAAGAAATCGGCTTTGACTCGTTTGATTGAGAA ATTTGAGTACAAGAAATTGAAATGGGTTGTGGGGGATAAGCTTGATTCAACTGGGAAACCCCAAGTTTATTTATCTGCAGTGCTTCAAAAACCAGCAAGA GGATGA
AA sequence Show only first row Show all	>Lus10024319 pacid=23174985 polypeptide=Lus10024319 locus=Lus10024319.g ID=Lus10024319.BGIv1.0 annot-version=v1.0 MTNVCYVSKKKLLSEEFDLGNENHKYVKGRGKNDFLADDVLGLASGGIRIGLDIGTASGGTFAARMAQRNVTVITNTLNLDAPFNEFVAARGLFPLYLSL DHRFPFYDNVFDLIHAAAFDFGTKPEKLEFLMFDIDRILRAGGLFWLDNLYCANDDKKSALTRLIEKFEYKKLKWVVGDKLDSTGKPQVYLSAVLQKPAR G

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10024319 [exp]	0	1
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10012420 [exp]	2.0	0.8546
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10024318 [exp]	2.4	0.8342
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10037013 [exp]	4.1	0.8587
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Lus10000280 [exp]	10.2	0.7636
AT5G64460			Phosphoglycerate mutase family...		Lus10007093 [exp]	14.5	0.8136
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10029809 [exp]	15.2	0.8310
AT5G64350		FKP12, ATFKBP12...	ARABIDOPSIS THALIANA FK506-BIN...		Lus10016586 [exp]	18.4	0.7797
AT2G32070			Polynucleotidyl transferase, r...		Lus10003635 [exp]	18.4	0.7930
AT1G66130			NAD(P)-binding Rossmann-fold s...		Lus10039898 [exp]	20.7	0.8194
AT1G45688			unknown protein		Lus10035869 [exp]	22.2	0.7176

Compare expression of checked genes

Lus10024319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.