Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19850 720 / 0 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT1G19220 512 / 1e-168 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT5G20730 505 / 3e-165 ARF MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) AT1G30330 494 / 1e-163 ARF ARF6 auxin response factor 6 (.1.2) AT5G37020 480 / 5e-160 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT5G62000 375 / 1e-118 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 348 / 3e-110 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT2G46530 337 / 8e-107 ARF ARF11 auxin response factor 11 (.1.2.3) AT1G34410 335 / 7e-106 ARF ARF21 auxin response factor 21 (.1) AT5G60450 337 / 6e-105 ARF ARF4 auxin response factor 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012421 [exp] 950 / 0 AT1G19850 1026 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10031354 [exp] 498 / 1e-166 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10010969 [exp] 498 / 1e-166 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10027600 [exp] 499 / 5e-164 AT1G19220 670 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10033598 [exp] 490 / 1e-163 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2) Lus10007386 [exp] 487 / 6e-162 AT5G37020 1021 / 0.0 auxin response factor 8 (.1.2) Lus10033597 [exp] 487 / 2e-161 AT1G19220 842 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10017641 [exp] 489 / 3e-160 AT1G30330 810 / 0.0 auxin response factor 6 (.1.2) Lus10033635 [exp] 476 / 6e-158 AT5G20730 741 / 0.0 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G236700 [exp] 786 / 0 AT1G19850 1060 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Potri.002G024700 [exp] 778 / 0 AT1G19850 1032 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Potri.005G207700 [exp] 513 / 5e-171 AT5G37020 694 / 0.0 auxin response factor 8 (.1.2) Potri.006G138500 [exp] 513 / 4e-168 AT1G19220 734 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.002G055000 [exp] 506 / 5e-168 AT1G30330 775 / 0.0 auxin response factor 6 (.1.2) Potri.004G078200 [exp] 496 / 2e-165 AT5G37020 1057 / 0.0 auxin response factor 8 (.1.2) Potri.017G141000 [exp] 494 / 9e-165 AT5G37020 1048 / 0.0 auxin response factor 8 (.1.2) Potri.006G077800 [exp] 499 / 4e-163 AT1G19220 664 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.018G063000 [exp] 497 / 8e-163 AT1G19220 735 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.018G145800 [exp] 495 / 7e-162 AT1G19220 665 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family CL0072 [flax] [poplar] PF06507 [flax] [poplar] Auxin_resp Auxin response factor CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10024320 pacid=23174994 polypeptide=Lus10024320 locus=Lus10024320.g ID=Lus10024320.BGIv1.0 annot-version=v1.0 ATGGCTTCTGTAGAAGAAAAAGGGAAAGCCGGAGTTGGCTTGCTCGGTGCCGGAGCACAAATTCCGGCGACATCAACTCTTCTGGATGAAATGAAGCTGT TCAAGGAAATCCAAGATCACTCTGCTGCAGCTGGTAGCCGCAAGGCGATAAACTCAGAACTTTGGTACGCATGTGCTGGCCCACTGGCTTCATTGCCTCA CGTTGGAAGCCTTGTGTATTACTTCCCTCAGGGTCACAGCGAGCAGGTTGCAGTTTCAACCAAGAGAAATGCAACTTCACAGATCCCCAACTACCCAAAT CTTCCTTCTCAGTTGCTGTGCCAGGTTCACAATGTTACTCTCCATGCAGACAGAGATACGGATGAAATCTATGCACAAATGAGTCTTCAACCAGTGAACT CTGATAAAGACATATTTCCTGTTCCGGACTTCGGATTGAAGCTGAGCAGGCATCCTGCCGAGTTTTTCTGCAAAACATTGACTGCTAGTGATACAAGCAC TCATGGTGGCTTCTCTGTGCCACGGAGGGCTGCAGAAAAGCTATTTCCTCAGCTGGATTACACAATGCAACCTCCATCTCAAGAGCTTATTGTCAGAGAC TTGCATGACAATGCCTGGACCTTTCGCCATATCTACCGAGGACAGCCAAAGAGACATCTTCTCACAACCGGGTGGAGTTTGTTTATTGGGTCCAAAAGGC TTAAAGCAGGAGATTCTGTCTTGTTCATCAGGGATGAGAAGTCACAGTTACTGGTGGGTATCAGGCGTGCAAATCGTCAACAGTCAACATTGCCGTCATC TGTTCTATCTGCAGATAGCATGCACATTGGTGTCCTTGCTGCAGCAGCTCATGCTGCCGCAAGCAGGAGTTCTTTCACCATATTTTACAATCCAAGGGCA TGTCCTTCAGAGTTTGTCATTCCTTTAGCCAATTACAGGAAAGCTGTGTATGGGACTCAAGTTGCGGTTGGCATGAGATTTGGGATGATGTTTGAGACAG AGGAGTCAGCCAAACGCAGATATATGGGCACGATAGTTGGCGTTAGTGACCTGGATCCATTGAGGTGGCCTGGTTCCAAATGGAGAAATCTCCAGGTGGA GTGGGATGAGCCAGGGTGTTCTGACAAGCCAAATAGAGTTAGTTCTTGGGATGTAGAAACTCCTGAAAGCCTCTTCATTTTCCCTTCTCTAACTTCAGGA CTCAAGCGGCCTATGCATAGTGGTTATTTAGGAGGAGAAACTGAATGGGGGAACTTGATTAAAAGACCTCTTGTCTGGCTTCCTGATGGAGGAAATACTA GTCTTGCTTACCCACCATTCTCGGATTCGGGATCTGATCGATTGCTCAACATGCTAATGAAACCACCAGCTTTTAACTATCCTGGATTATCTTCTCCTTC CTTCCAAGATATCTCTGCTGCCAAAGGACCGTCAGTGGAAGATGCTAATAAGACATTAAACACCCCCCTGCCTTTCCGGGCCACAGTTGAAGAATGGCCC TCGCAGCCACCAGATACTGATTTCCACAACCTTTCTTCGGATTGCCTGTTGGGGAATTTCAGTTCAAGCCAGGATGTTCAGTCTCAGATAACTTCCGTAA GCTTAGCTGACTCGCAAGCTTTCTCGCAGCAGGAGTTCCCTGATAGTTCAGGCGGGACTTCTTCTAGCAATGTTGAGTTTGATAAGGGCGGCAACCTCCT GCAAACCAACTCCTGGCAGCCAGTTGTTCCTCCCCGTGTAAGGACATATACCAAGGTTCAGAAGGCAGGGTCTGTGGGGAGGTCAATTGATGTTTCTAGC TTTAAGAACTATGAGGAGCTGTGCTCAGCGATTGAGTGTATGTTTGGGCTTGGCGGGTTGCTAAACAATCCAAGGGAGTCTGGGTGGAAACTAGTTTATG TTGACTATGAGAATGACGTTCTGCTAATTGGAGATGATCCTTGGGAGGAATTTGTTGGGTGCGTACGGTGCATAAGGATACTGTCACCTCAAGAAGTTCA GCAGATCAGCGAGGAAGGAATGAAGCTTCTCAACAATGCCAATATGCAGCAAGGGACATCATCCTTAGCTGGACAAGGTTACTAA
AA sequence Show only first row Show all	>Lus10024320 pacid=23174994 polypeptide=Lus10024320 locus=Lus10024320.g ID=Lus10024320.BGIv1.0 annot-version=v1.0 MASVEEKGKAGVGLLGAGAQIPATSTLLDEMKLFKEIQDHSAAAGSRKAINSELWYACAGPLASLPHVGSLVYYFPQGHSEQVAVSTKRNATSQIPNYPN LPSQLLCQVHNVTLHADRDTDEIYAQMSLQPVNSDKDIFPVPDFGLKLSRHPAEFFCKTLTASDTSTHGGFSVPRRAAEKLFPQLDYTMQPPSQELIVRD LHDNAWTFRHIYRGQPKRHLLTTGWSLFIGSKRLKAGDSVLFIRDEKSQLLVGIRRANRQQSTLPSSVLSADSMHIGVLAAAAHAAASRSSFTIFYNPRA CPSEFVIPLANYRKAVYGTQVAVGMRFGMMFETEESAKRRYMGTIVGVSDLDPLRWPGSKWRNLQVEWDEPGCSDKPNRVSSWDVETPESLFIFPSLTSG LKRPMHSGYLGGETEWGNLIKRPLVWLPDGGNTSLAYPPFSDSGSDRLLNMLMKPPAFNYPGLSSPSFQDISAAKGPSVEDANKTLNTPLPFRATVEEWP SQPPDTDFHNLSSDCLLGNFSSSQDVQSQITSVSLADSQAFSQQEFPDSSGGTSSSNVEFDKGGNLLQTNSWQPVVPPRVRTYTKVQKAGSVGRSIDVSS FKNYEELCSAIECMFGLGGLLNNPRESGWKLVYVDYENDVLLIGDDPWEEFVGCVRCIRILSPQEVQQISEEGMKLLNNANMQQGTSSLAGQGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19850	ARF	IAA24, ARF5, MP	MONOPTEROS, indole-3-acetic ac...		Lus10024320 [exp]	0	1
AT1G19850	ARF	IAA24, ARF5, MP	MONOPTEROS, indole-3-acetic ac...		Lus10012421 [exp]	1.0	0.8613
AT3G44830			Lecithin:cholesterol acyltrans...		Lus10019519 [exp]	2.0	0.8485
AT1G58060			RNA helicase family protein (....		Lus10012695 [exp]	12.0	0.7421
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10039650 [exp]	19.7	0.8280
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10018011 [exp]	28.5	0.7956
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10011730 [exp]	31.6	0.8195
AT1G67040			unknown protein		Lus10017607 [exp]	34.4	0.8091
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10012325 [exp]	34.6	0.7000
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10031608 [exp]	35.0	0.8082
AT2G28490			RmlC-like cupins superfamily p...		Lus10011364 [exp]	42.9	0.8082

Compare expression of checked genes

Lus10024320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.