Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19835 786 / 0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G47900 728 / 0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT4G36120 543 / 2e-177 Plant protein of unknown function (DUF869) (.1) AT2G23360 218 / 7e-59 Plant protein of unknown function (DUF869) (.1) AT1G77580 118 / 4e-27 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT3G05270 117 / 4e-27 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G21810 99 / 5e-21 Plant protein of unknown function (DUF869) (.1) AT3G19370 89 / 7e-18 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2), Plant protein of unknown function (DUF869) (.3) AT2G24470 63 / 8e-12 Plant protein of unknown function (DUF869) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012431 [exp] 1659 / 0 AT1G19835 901 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10024325 [exp] 1556 / 0 AT1G19835 787 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10033160 [exp] 1162 / 0 AT1G19835 949 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10034509 [exp] 667 / 0 AT1G19835 582 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10034510 [exp] 477 / 2e-158 AT1G19835 343 / 5e-108 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10004994 [exp] 209 / 3e-55 AT2G23360 481 / 7e-154 Plant protein of unknown function (DUF869) (.1) Lus10032386 [exp] 181 / 3e-53 AT1G19835 84 / 4e-20 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10018164 [exp] 136 / 1e-32 AT1G77580 395 / 6e-129 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10029679 [exp] 131 / 5e-31 AT1G77580 372 / 1e-119 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G024400 [exp] 1066 / 0 AT1G19835 941 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G237100 [exp] 1062 / 0 AT1G19835 869 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G140300 [exp] 253 / 6e-70 AT2G23360 551 / 0.0 Plant protein of unknown function (DUF869) (.1) Potri.007G046100 [exp] 246 / 2e-67 AT2G23360 549 / 3e-180 Plant protein of unknown function (DUF869) (.1) Potri.009G099500 [exp] 186 / 2e-48 AT2G23360 295 / 2e-86 Plant protein of unknown function (DUF869) (.1) Potri.001G304200 [exp] 183 / 2e-47 AT2G23360 279 / 2e-80 Plant protein of unknown function (DUF869) (.1) Potri.002G083400 [exp] 135 / 1e-32 AT3G05270 334 / 2e-105 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G178100 [exp] 131 / 2e-31 AT3G05270 356 / 1e-114 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.007G098500 [exp] 123 / 9e-29 AT3G05270 310 / 7e-97 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G070400 [exp] 117 / 7e-27 AT3G05270 308 / 6e-96 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05911 [flax] [poplar] FPP Filament-like plant protein, long coiled-coil
Representative CDS sequence Show only first row Show all	>Lus10024324 pacid=23174955 polypeptide=Lus10024324 locus=Lus10024324.g ID=Lus10024324.BGIv1.0 annot-version=v1.0 ATGGACCGCCGGAGTTGGCCATGGAAGAAGAAATCCTCATCGGAGAAGGCCGTGAAAGCGGCGGCGCCGGCAGCAGCAGCAGCTGAGTCTCTTGATTCTA ATTTGGCTTCTACTGAATCACAGGGAGAGAAGGACAACTACAAGAAACCCAATTTTGTGCAAATCTCAGTTGAATCATATACCCATTTGACTGGTCTGGA GGAGCAAGTTAAATCCTATGAAGATCAAGTTCAGTCGCTGGATGATGAGATCAAGGATTTGAATGAGAAGCTGTCAGCAGCCGAGTCAGAGATGACTACC AAAGAGAACTTGGTGAAACAGCATGCTAAGGTTGCTGAAGAAGCTGTCTCAGGTTGGGAAAAGGCTGAAGCAGAGGCTTTGGCATTGAAGAACAGTCTAG AGACGATGACTCTCTCGAAGCTGACAGTTGAAGATCGGGCTGCACATTTGGACGGTGCTCTCAAAGAATGCATGAGGCAGATACGCAATCTGAAAGAAGA ACACGAGCACAAGTTACAGGAACTTGTTGTTACCAAGAACAAGCAATGTGATAAAATCAGGCTTGATCTCGAGTCAAAGATAGCGAATTTGGATCAGGAG CTGCTGAGGTCTGCTGCAGAGAATGCCGCATTGTTAAGGTCGTTGCAAGAGCGTGGCAACATGCTAGTGAAGATGAGCGAAGAGAAATCCCAAGCCGAGG CTGAGATCGAGCTTCTCAAGGGTAATGTGGAATCATGTGAGAGGGAAATAAATTCAATGAAGTACGAAGTCCATGTGGTCTCCAAGGAACTGGAAATAAG AAATGAAGAGAAGAACATGAGCATGAGATCTGCTGAAGTAGCGAACAAGCAGCATATGGAAGGTGTTAAGAAGATAGCTAAGCTAGAAGCAGAATGCCAA AGGTTACGCGGCCTGGTCAGAAAGAAATTGCCCGGTCCCGCTGCACTCGCACAAATGAAGCTTGAAGTTGAGAGCTTAGGTCGTGATTATGGTGATTCAA GGATCAAAAGGTCACCTGTTATGCCTTCTAGTCCACATATGTCACCCCTCACTGAGTTTTCGCATGACAATTCACCGAAGTTCCACAAAGAAACTGAGTT CCTGACTGAGCGATTATTCTCCATGGAAGAAGAAACCAAGATGCTCAAAGAAGCTTTAGCAAAGCGGAACAGTGAACTTCAGGCTTCTAGGAATCTATGT GCCAAGACATCAAGCAGGCTTCAGAGTTTAGAAGCACAAGTTCATATGAAATCTTCTCCAAAATCCATCATCCAGGTGGTGCCTGCTGAAGGTTTCTCCA CTCAAAATGCCAGCAATCCACCTAGCATTACATCCATGTCCGAGGATGGTAATGATGACGATCGAAGCTGTGCTGACTCATGGACGGCATCAATGATCGC TGAGTTTTCTCATCTGAAGAAGGAAAAGGGCCAGAGATCAATCAAGTCGGAAAATTCAAAGAACCTGGACCTCATGGATGACTTCCTTGAAATGGAGAAG CTGGCTTGTTTGGATGCACCCTCGGAATCTCCAAAGAACAAGACTTGTGAAATTTATAATGGTGGACCTCCAGCTGAAGTTGTCTCTATGACTGAAGTGC AGCCTGACACGGATCGATCTAATATCGAACAACTTTCTTTGACGAAAATTCGATTCAAGTTATCTTCGTTGCTGAACTCTATGACAAATGAAACCCACAT GAGAAAGATATTGGAGGATGTTAAACACGTTATTGCAGAAGAGGGTGGCCAGCAGTCTATAGAGAAGAAGGAAAGTGAGAGTGAAATGAGCCAAGAATTG GCAACTGCTGTTTCTCAGATTCATGACTTTGTATTACTCCTCCGTAAAGAAGCAATAGCAGTTGATGATGCTTTGGACTGCAATGGTTTGACCAAGAAAA TAGATGACCTCTCTGTTACTATTAACAAACTTCTGAGCCAAGGTACAACCTTGACTACATTCGTTTTCGACCTTTCTCATGTAATGGACAAAGCAAGTGA ACTCCGGTTCAGTGTCCTTGGGTACAAAGGTAATGAAGCGGAAATCAACAGCCCAGATTGTATAGATAAAGTTGCCTTACCAGAGAACAAGATTGCACAA CAGGATGATGGTCCATCATCATCGTCGTCTGGTGTGAGTTACGAGAATGGCTGCACAACCACCCATGTCTCGAGTCCAAAATCAAACCCTGAGGTTCCTG ATGATGGGAACCTGACTGCATCAGGCAAAGTCTCATTGCAGGAGTTTGAAGAAGTCAAGTTGGAGAAGGAAAACATGGCAACTGACCTTGCAAGATGTAC TGAAGATCTTCAAACCACAAAGTCTCAGTTAGAAGAAACGGAGAGACTACTTGGTGAAGTCAGATCACAGTTGGCTTCTGCAGAGAAGTCAAACAGTTTG GCTGAGACGCAGTTGAAATGCATGGCGGGATCCTATAGATCACTTGAAGTACGTGCAGAGGAGCTGGAAACTGAGATCAATCTTCTTAGAGTTAAGACAC AGGCGCTAGAGAATGAACTCGAAAGCGAAAAGACTAGCCATGAAGATGCTTTGAGACGATGCAAGGATCTTCAAGAGGAACTGGAAAAGAACGGGAGTTG TCCAGTCTGTGCAGCAGCAGCAATAGAGATGGACGGCAAGAATAAACAGGAGAAGAATCTAGCAGCAGCTGCAGAGAAGCTAGCAGAGTGCCAAGAGACT ATTTTCTTGCTAGGCAAGCAACTCAAGTCTCTGCATCCTCAGGCAGATGCAGAGACGACCACGGTTACTTCTAATAACGAAAGAGTTGATGGATCCAATG GAGAGGAATCAACCAGAAGCGACACCAACTTGCAAGAGATTATGGATACAGCTACTTCTCCCGATCCTCAGTCCCCAGCACATAAATACGACCACCATTC TGATGCAGAAACCAACCTAGTCAGTTCAAAGAATAAAAAACATAGGACTACAAAATCAACATCATCATCGTCAACATCGTCCACCCCGACGCCAGAGAAG CATAAGGGGTTCAGCAGGTTCTTTTCATCCAAAGGAAATAAGAATGGATATCAGTAA
AA sequence Show only first row Show all	>Lus10024324 pacid=23174955 polypeptide=Lus10024324 locus=Lus10024324.g ID=Lus10024324.BGIv1.0 annot-version=v1.0 MDRRSWPWKKKSSSEKAVKAAAPAAAAAESLDSNLASTESQGEKDNYKKPNFVQISVESYTHLTGLEEQVKSYEDQVQSLDDEIKDLNEKLSAAESEMTT KENLVKQHAKVAEEAVSGWEKAEAEALALKNSLETMTLSKLTVEDRAAHLDGALKECMRQIRNLKEEHEHKLQELVVTKNKQCDKIRLDLESKIANLDQE LLRSAAENAALLRSLQERGNMLVKMSEEKSQAEAEIELLKGNVESCEREINSMKYEVHVVSKELEIRNEEKNMSMRSAEVANKQHMEGVKKIAKLEAECQ RLRGLVRKKLPGPAALAQMKLEVESLGRDYGDSRIKRSPVMPSSPHMSPLTEFSHDNSPKFHKETEFLTERLFSMEEETKMLKEALAKRNSELQASRNLC AKTSSRLQSLEAQVHMKSSPKSIIQVVPAEGFSTQNASNPPSITSMSEDGNDDDRSCADSWTASMIAEFSHLKKEKGQRSIKSENSKNLDLMDDFLEMEK LACLDAPSESPKNKTCEIYNGGPPAEVVSMTEVQPDTDRSNIEQLSLTKIRFKLSSLLNSMTNETHMRKILEDVKHVIAEEGGQQSIEKKESESEMSQEL ATAVSQIHDFVLLLRKEAIAVDDALDCNGLTKKIDDLSVTINKLLSQGTTLTTFVFDLSHVMDKASELRFSVLGYKGNEAEINSPDCIDKVALPENKIAQ QDDGPSSSSSGVSYENGCTTTHVSSPKSNPEVPDDGNLTASGKVSLQEFEEVKLEKENMATDLARCTEDLQTTKSQLEETERLLGEVRSQLASAEKSNSL AETQLKCMAGSYRSLEVRAEELETEINLLRVKTQALENELESEKTSHEDALRRCKDLQEELEKNGSCPVCAAAAIEMDGKNKQEKNLAAAAEKLAECQET IFLLGKQLKSLHPQADAETTTVTSNNERVDGSNGEESTRSDTNLQEIMDTATSPDPQSPAHKYDHHSDAETNLVSSKNKKHRTTKSTSSSSTSSTPTPEK HKGFSRFFSSKGNKNGYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19835			Plant protein of unknown funct...		Lus10024324 [exp]	0	1
AT1G19835			Plant protein of unknown funct...		Lus10024325 [exp]	1.0	0.9948
AT5G47490			RGPR-related (.1)		Lus10008520 [exp]	2.0	0.9499
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10036883 [exp]	2.4	0.9493
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10037795 [exp]	3.2	0.9350
AT1G64650			Major facilitator superfamily ...		Lus10000337 [exp]	3.5	0.9492
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009460 [exp]	4.2	0.9186
AT5G47490			RGPR-related (.1)		Lus10004721 [exp]	4.5	0.9163
AT5G16720			Protein of unknown function, D...		Lus10004050 [exp]	5.5	0.9090
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10037888 [exp]	5.7	0.9204
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Lus10035580 [exp]	6.9	0.9082

Compare expression of checked genes

Lus10024324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.