Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19835 690 / 0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G47900 629 / 0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT4G36120 442 / 1e-140 Plant protein of unknown function (DUF869) (.1) AT2G23360 192 / 1e-50 Plant protein of unknown function (DUF869) (.1) AT3G05270 77 / 4e-14 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT3G19370 77 / 5e-14 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2), Plant protein of unknown function (DUF869) (.3) AT1G77580 76 / 7e-14 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G21810 64 / 3e-10 Plant protein of unknown function (DUF869) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024324 [exp] 1546 / 0 AT1G19835 919 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10012431 [exp] 1456 / 0 AT1G19835 901 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10033160 [exp] 1019 / 0 AT1G19835 949 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10034509 [exp] 528 / 3e-180 AT1G19835 582 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10034510 [exp] 475 / 4e-159 AT1G19835 343 / 5e-108 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10032386 [exp] 181 / 2e-53 AT1G19835 84 / 4e-20 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10004994 [exp] 196 / 2e-51 AT2G23360 481 / 7e-154 Plant protein of unknown function (DUF869) (.1) Lus10033813 [exp] 93 / 5e-23 AT1G19835 57 / 1e-11 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10018164 [exp] 92 / 7e-19 AT1G77580 395 / 6e-129 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G024400 [exp] 924 / 0 AT1G19835 941 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G237100 [exp] 923 / 0 AT1G19835 869 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G140300 [exp] 229 / 2e-62 AT2G23360 551 / 0.0 Plant protein of unknown function (DUF869) (.1) Potri.007G046100 [exp] 216 / 5e-58 AT2G23360 549 / 3e-180 Plant protein of unknown function (DUF869) (.1) Potri.009G099500 [exp] 177 / 9e-46 AT2G23360 295 / 2e-86 Plant protein of unknown function (DUF869) (.1) Potri.001G304200 [exp] 175 / 5e-45 AT2G23360 279 / 2e-80 Plant protein of unknown function (DUF869) (.1) Potri.002G083400 [exp] 91 / 1e-18 AT3G05270 334 / 2e-105 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G178100 [exp] 84 / 1e-16 AT3G05270 356 / 1e-114 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.007G098500 [exp] 79 / 9e-15 AT3G05270 310 / 7e-97 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G070400 [exp] 73 / 4e-13 AT3G05270 308 / 6e-96 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05911 [flax] [poplar] FPP Filament-like plant protein, long coiled-coil
Representative CDS sequence Show only first row Show all	>Lus10024325 pacid=23174986 polypeptide=Lus10024325 locus=Lus10024325.g ID=Lus10024325.BGIv1.0 annot-version=v1.0 ATGACTCTCTCGAAGCTGACAGTTGAAGATCGGGCTGCACATTTGGACGGTGCTCTCAAAGAATGCATGAGGCAGATACGCAATCTGAAAGAAGAACACG AGCACAAGTTACAGGAACTTGTTGTTACCAAGAACAAGCAATGTGATAAAATCAGGCTTGATCTCGAGTCAAAGATAGCGAATTTGGATCAGGAGCTGCT GAGGTCTGCTGCGGAGAGTGCAGCACTGTTAAGGTCGTTGCAAGAGCGTGGCAACATGCTAGTGAAGATGAGCGAAGAGAAATCCCAAGCCGAGGCTGAG ATCGAGCTTCTCAAGGGTAATGTGGAATCATGTGAGAGGGAAATAAATTCAATGAAGTACGAAGTCCATGTGGTCTCCAAGGAACTGGAAATAAGAAATG AAGAGAAGAACATGAGCATGAGATCTGCTGAAGTAGCGAACAAGCAGCATATGGAAGGTGTTAAGAAGATAGCTAAGCTAGAAGCAGAATGCCAAAGGTT ACGCGGCCTGGTCAGAAAGAAATTGCCTGGTCCTGCTGCACTTGCACAAATGAAGCTTGAAGTTGAGAGCTTAGGTCGTGATTATGGTGATTCAAGGACC AAAAGGTCTCCTGTTAAGCCTTCTAGCCCACATATGTCACCTCTCACTGAGTTTTCGCTTGACAATTCACCAAAGTTCCATAAAGAAACTGAGTTCCTGA CTGAGCGATTGTTCGCCATGGAAGAAGAAACCAAGATGCTCAAAGAAGCTTTAGCAAAGCGGAACAGTGAACTTCAGGCTTCTAGGAATCTATGTGCCAA GACATCAAGCAGGCTTCAGAGTTTAGAAGCACAAGTTCATATGAAATCTTCTCCAAAATCCATCATCCAGGTGGTGCCTGCTGAAGGTTTCTCCACTCAA AATGCCAGCAATCCACCTAGCATTACATCCATGTCCGAGGATGGTAATGATGACGATCGAAGCTGTGCTGACTCATGGACGGCATCAATGATCTCCGAGT TTTCTCATCTGAAGAAGGAAAAGGGCGAGAGATCAATCAAGTCTGAAAATTCAAAGAACCTGGACCTCATGGATGACTTCCTTGAAATGGAGAAGCTGGC TTGTTTGGATGCACACACTGCACTCTCAGAATCTCCAAACAGCAAGACTTCTGAAATTGCTAATGGTGGACCTCCAGCTGAAGTTGTCTCTATGACTGAA GTGCAGCCTGACACGGATCGATCTAATATCGAACAACTTTCTTTGACGAAAATTCGATTCAAGTTATCTTCGTTGCTGAACTCTATGACAAATGAAACCC ACATGAGAAAGATATTGGAGGATGTTAAACACGTTATTGCAGAAGAGGGTGGCCAGCAGTCTATAGAGAAGAAGGAAAGTGAGAGTGAAATGAGCCAAGA ATTGGCAACTGCTGTTTCTCAGATTCATGACTTTGTATTACTCCTCCGTAAAGAAGCAATAGCAGTTGATGATGCTTTGGACTGCAATGGTTTGACCAAG AAAATAGATGACCTCTCTGTTACTATTAACAAACTTCTGAGCCAAGGTACAACCTTGACTACATTCGTTTTCGACCTTTCTCATGTAATGGACAAAGCAA GTGAACTCCGGTTCAGTGTCCTTGGGTACAAAGGTAATGAAGCGGAAATCAACAGCCCAGATTGTATAGATAAAGTTGCCTTACCAGAGAACAAGATTGC ACAACAGGATGATGGTCCATCATCATCGTCGTCTGGTGTGAGTTACGAGAATGGCTGCACAACCACCCATGTCTCGAGTCCAAAATCAAACCCTGAGGTT CCTGATGATGGGAACCTGACTGCATCAGGCAAAGTCTCATTGCAGGAGTTTGAAGAAGTCAAGTTGGAGAAGGAAAACATGGCAACTGACCTTGCAAGAT GTACTGAAGATCTTCAAACCACAAAGTCTCAGTTAGAAGAAACGGAGAGACTACTTGGTGAAGTCAGATCACAGTTGGCTTCTGCAGAGAAGTCAAACAG TTTGGCTGAGACGCAGTTGAAATGCATGGCGGGGTCCTATAGATCACTTGAAGTACGTGCAGAGGAGCTGGAAACTGAGATCAATCTTCTTAGAGTTAAG ACACAGGCGCTAGAGAATGAACTCGAAAGCGAAAAGACTAGCCATGAAGATGCATTGAGACGATGCAAGGATCTTCAAGAGGAACTGGAAAAGAACGGGA GTTGTCCAGTCTGTGCAGCAGCAGCAATAGAGATGGACGGCAAGAATAAACAGGAGAAGAATCTAGCAGCAGCTGCAGAGAAGCTAGCAGAGTGCCAAGA GACTATTTTCTTGCTAGGCAAGCAACTCAAGTCTCTGCATCCTCAGGCAGATGCAGAGACGACCACGGTTACTTCTAATAACGAAAGAGTTGATGGATCC AATGGAGAGGAATCAACCAGAAGCGACACCAACTTGCAAGAGATTATGGATACAGCTACTTCTCCCGATCCTCAGTCCCCAGCACATAAATACGACCACC ATTCTGATGCAGAAACCAACCTAGTCAGTTCAAAGAATAAAAAACATAGGACTACAAAATCAACATCATCATCGTCAACATCGTCCACCCCGACGCCAGA GAAGCATAAGGGGTTCAGCAGGTTCTTTTCATCCAAAGGAAATAAGAATGGATATCAGTAA
AA sequence Show only first row Show all	>Lus10024325 pacid=23174986 polypeptide=Lus10024325 locus=Lus10024325.g ID=Lus10024325.BGIv1.0 annot-version=v1.0 MTLSKLTVEDRAAHLDGALKECMRQIRNLKEEHEHKLQELVVTKNKQCDKIRLDLESKIANLDQELLRSAAESAALLRSLQERGNMLVKMSEEKSQAEAE IELLKGNVESCEREINSMKYEVHVVSKELEIRNEEKNMSMRSAEVANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKLEVESLGRDYGDSRT KRSPVKPSSPHMSPLTEFSLDNSPKFHKETEFLTERLFAMEEETKMLKEALAKRNSELQASRNLCAKTSSRLQSLEAQVHMKSSPKSIIQVVPAEGFSTQ NASNPPSITSMSEDGNDDDRSCADSWTASMISEFSHLKKEKGERSIKSENSKNLDLMDDFLEMEKLACLDAHTALSESPNSKTSEIANGGPPAEVVSMTE VQPDTDRSNIEQLSLTKIRFKLSSLLNSMTNETHMRKILEDVKHVIAEEGGQQSIEKKESESEMSQELATAVSQIHDFVLLLRKEAIAVDDALDCNGLTK KIDDLSVTINKLLSQGTTLTTFVFDLSHVMDKASELRFSVLGYKGNEAEINSPDCIDKVALPENKIAQQDDGPSSSSSGVSYENGCTTTHVSSPKSNPEV PDDGNLTASGKVSLQEFEEVKLEKENMATDLARCTEDLQTTKSQLEETERLLGEVRSQLASAEKSNSLAETQLKCMAGSYRSLEVRAEELETEINLLRVK TQALENELESEKTSHEDALRRCKDLQEELEKNGSCPVCAAAAIEMDGKNKQEKNLAAAAEKLAECQETIFLLGKQLKSLHPQADAETTTVTSNNERVDGS NGEESTRSDTNLQEIMDTATSPDPQSPAHKYDHHSDAETNLVSSKNKKHRTTKSTSSSSTSSTPTPEKHKGFSRFFSSKGNKNGYQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19835			Plant protein of unknown funct...		Lus10024325 [exp]	0	1
AT1G19835			Plant protein of unknown funct...		Lus10024324 [exp]	1.0	0.9948
AT1G64650			Major facilitator superfamily ...		Lus10000337 [exp]	1.4	0.9571
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10036883 [exp]	1.7	0.9519
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10037795 [exp]	2.0	0.9495
AT5G16720			Protein of unknown function, D...		Lus10004050 [exp]	3.7	0.9122
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10037888 [exp]	3.7	0.9310
AT5G47490			RGPR-related (.1)		Lus10008520 [exp]	4.5	0.9393
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Lus10035580 [exp]	4.7	0.9174
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009460 [exp]	5.5	0.9177
AT2G01970			Endomembrane protein 70 protei...		Lus10031308 [exp]	6.0	0.9388

Compare expression of checked genes

Lus10024325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.