Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75660 1107 / 0 AtXRN3, XRN3 5'-3' exoribonuclease 3 (.1) AT5G42540 881 / 0 AtXRN2, XRN2 exoribonuclease 2 (.1.2) AT1G54490 443 / 4e-140 ATXRN4, XRN4, EIN5, AIN1 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012434 [exp] 1691 / 0 AT1G75660 1291 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10034514 [exp] 1172 / 0 AT1G75660 968 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10004119 [exp] 454 / 4e-146 AT1G54490 1140 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10015946 [exp] 429 / 1e-134 AT1G54490 1033 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10000941 [exp] 418 / 9e-132 AT1G54490 1092 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10020397 [exp] 367 / 3e-109 AT1G75660 782 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10013326 [exp] 333 / 3e-99 AT1G75660 636 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10019004 [exp] 286 / 8e-86 AT1G54490 436 / 1e-143 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10013328 [exp] 271 / 5e-78 AT1G75660 516 / 2e-171 5'-3' exoribonuclease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G237500 [exp] 1267 / 0 AT1G75660 1246 / 0.0 5'-3' exoribonuclease 3 (.1) Potri.002G024100 [exp] 1146 / 0 AT1G75660 1137 / 0.0 5'-3' exoribonuclease 3 (.1) Potri.005G048900 [exp] 448 / 6e-142 AT1G54490 1231 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.013G035600 [exp] 432 / 7e-136 AT1G54490 1175 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.013G070200 [exp] 375 / 2e-112 AT1G54490 779 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF03159 [flax] [poplar] XRN_N XRN 5'-3' exonuclease N-terminus CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle
Representative CDS sequence Show only first row Show all	>Lus10024327 pacid=23175012 polypeptide=Lus10024327 locus=Lus10024327.g ID=Lus10024327.BGIv1.0 annot-version=v1.0 ATGGGAGTTCCCGCGTTTTACCGGTGGCTGGCCGAGAAGTATCCCATGGTCATCGTGGATGTAATCGAAGAGGAGGCGGTGGTGATTGAAGACGTCAAGA TTCCGGTCGATACTAGCAAGCCCAACCCTAATGAGATCGAGTACGATAATCTCTACCTCGACATGAACGGGATTATTCATCCTTGCTTCCATCCTGAAGA TAGGGCAGATGGTGTTGCTCCTCGTGCGAAGATGAATCAACAGCGGTCTAGGCGTTTTAGGGCTGCTAAAGATGCATCAGATGCGGCAGCAGAAGAAGCT AGGCTCAGAGAGGAGTTTGAGAAGGAGGGGAGAACGCTTCCTCCTAAGGAGGAGTCGCAAACCTTTGATTCTAACGTCATCACTCCTGGAACTCCTTTTA TGGCTGTTCTCTCAGTTGCATTGCAGTACTATATTCATCTGAGACTGAATAATGATCCTGGATGGAAGAATATTAAGGTTATTCTTTCCGATGCAAATGT CCCTGGCGAAGGGGAACATAAGATTATGTCATATATCCGGCTTCAAAGAAATCTTCCTGGTTATGATCCAAATACTTGCCACTGCCTATATGGTTTGGTT GTCTTCACTCCTGGACAGCAAGACAAATGCTTCATTTGTGGTCAAATAGGTCATTTAGCTGCAAATTGCGAGGGAAAGGCAAAAAAGAAGGCTGGCGAGT TTGATGAGAAAGGTGGGGAGGCAGCTGTACCTAAAAAGCCATACCAGTTCCTCAACATCTGGACTTTGAGAGAATATCTTGAATATGAATTGAGAATTCC CAACCCTCCTTTTAAAATTGATTTGGAGCGAGTTGTGGATGATTTTATCTTTATGTGTTTCTTTGTTGGGAATGATTTTCTGCCACATATGCCGACTCTT GAGATTCGTGAGGGTGCAATTAACTTGCTGCTTGCCGTATACAAGAAGGAATTCAAGTCAATGGGCGGGTACTTGACTGATGGCAGCAAGCCAAATTTAG ACAGGGTGGAGCATTTTATCCAATCAGTAGGATCATTTGAAGATCAAATATTTCAGAAAAGAGCTCGTTTACAACAGCGTCAGACGGAAAGAATCAAGCG TGAAAAGTCACAGGTGAAAAAAGGGGACGATGCTGCACCTCAAGTTCAACCAGATTCTTTGGTCCCGGTTAATAGATTTCATGGTTCTCGTCTAGCATCA GCTTCAGCTCCATCACCGTATGAGCATAACTCTGAAAGTACAAATGGTGATGCGAAAAGGAAACATTCCTTGACTAATAATGATAAAGGATCCCCTGATC GACCCAATAAAGTTGCCCGGTTGTCTTCAGCAGCCAATATTGGTGCAGCCATTGTGGAAGCAGAGAATAACCTGGAAATAGAAGAGCAAGAAAACAAAGA TGAACTCAAAACTAAGTTGAAGGCCTTACTGCGTGAGAAAGCTGATGTCTTTAACTCAGAAAACGGCGGAGAAGACCAGGTTAAGCTCGGAGAGCCGGGT TGGAAGGAGAGGTACTATGAGGAGAAGTTTTCTGGAGAAACTATTGAAGAACTTGAAAATGTTCGAAGAGATGTTGTTTTAAAATATGTTGAAGGTCTAT GCTGGGTTATGCATTATTATTATGAAGGAGTTTGTTCTTGGCGCTGGTTCTATCCCTATCATTATGCACCCTTTGCTTCTGATCTTAAGGACCTTGGTCA GTTGGATATTACGTTCGATATGGGTTCTCCTTTCAAACCGTTCAATCAGCTTTTGGGAGTTTTTCCTTCTGCAAGTTCTCATGCTCTTCCTGTAGAGTAT AGAAAGTTGATGTCAGATGCAAACTCACCTATTATTGATTTCTACCCAGTTGATTTTGAAGTCGACATGAATGGGAAACGGTTCTCCTGGCAGGGTATCG CAAAACTTCCATTCATTGACGAAGGTCGGCTTCTTGCTGAAGTTGAGAAAATAGAACATACTTTAACGGAGGAGGAAGCAAGGAGGAACAGTTTCATGTT TGACATGCTTTTTGTTTCTTCATCTCACGCTATGGCCCAGTGCATATATTTGCTCGACAATCAGTCTAAACAACTGACAAACAATGAGAGAATTGATATC AAGGAACGACTAAACCCTGAATTGAGGACTACGTGCAGTGATGGGATGAATGGCTATATATCCCCTTGTGGCGGAGATACTCACCCTCCAGTATTTAGGT CCCCAGTTGCAGGCATGGAAGACATTTTGGACAACGAAGTCATATGTGCTATTTACAGACTCCCTGATCCCCATAGTCACATTACCCGACCACCTCCTGG AGTCAAGTTCCCTAAAAAGACTGTTGGCTTGGAAGACATGCAACCTGAACCTGTTTTATGGCATGAAGATACCGGAAGGGGGCCTCGGGGTCGGGGTAAT TATGACAGGCACAACAATAACCACCGTGGAAACTTCTCTGGCCGTCAGCTTGGGGATGCATCACATCGGCTGGTCACCAATAGCTTGCAGGGAAACAGAC ATGGGAATCATTATAACAACCACCATGCACATGGTCGATCATCTTACAATCCCATGCAGTATGCCCCCCCTTGCAACTCATCTTACTCTTCTAATGGATC CCACGATCAGGGGAGACGTGGAGCGGCGGACTACTCACATTCTAGACATCAAGCTGCTGTTATAGACCCGCCCTATGAAGTCCCTGTCGGCACCAACCCA CGCTATGGAGGCTCTCGTCCTTCCTATGAACGCGAGAGCCGAGATCAAGGATATTATCCTCAAGCCGCACCAGGATATGGTCATAACCATCATCAACAGA GCAGCAATCGATTTGGTGCATTCGAGCAAAGAGGGAACAGATTCCCACCTCCCCAACATGGAGGACACCAAAGGACTCATCAGCAACATCCGCCTCCACC TGGGACTGGCAATCGGAGGCCGCCTTATCCACCATCAAATGCGGCAGCAGGTAGGAGGCCTGGTGGTTACAACAGGCGATAG
AA sequence Show only first row Show all	>Lus10024327 pacid=23175012 polypeptide=Lus10024327 locus=Lus10024327.g ID=Lus10024327.BGIv1.0 annot-version=v1.0 MGVPAFYRWLAEKYPMVIVDVIEEEAVVIEDVKIPVDTSKPNPNEIEYDNLYLDMNGIIHPCFHPEDRADGVAPRAKMNQQRSRRFRAAKDASDAAAEEA RLREEFEKEGRTLPPKEESQTFDSNVITPGTPFMAVLSVALQYYIHLRLNNDPGWKNIKVILSDANVPGEGEHKIMSYIRLQRNLPGYDPNTCHCLYGLV VFTPGQQDKCFICGQIGHLAANCEGKAKKKAGEFDEKGGEAAVPKKPYQFLNIWTLREYLEYELRIPNPPFKIDLERVVDDFIFMCFFVGNDFLPHMPTL EIREGAINLLLAVYKKEFKSMGGYLTDGSKPNLDRVEHFIQSVGSFEDQIFQKRARLQQRQTERIKREKSQVKKGDDAAPQVQPDSLVPVNRFHGSRLAS ASAPSPYEHNSESTNGDAKRKHSLTNNDKGSPDRPNKVARLSSAANIGAAIVEAENNLEIEEQENKDELKTKLKALLREKADVFNSENGGEDQVKLGEPG WKERYYEEKFSGETIEELENVRRDVVLKYVEGLCWVMHYYYEGVCSWRWFYPYHYAPFASDLKDLGQLDITFDMGSPFKPFNQLLGVFPSASSHALPVEY RKLMSDANSPIIDFYPVDFEVDMNGKRFSWQGIAKLPFIDEGRLLAEVEKIEHTLTEEEARRNSFMFDMLFVSSSHAMAQCIYLLDNQSKQLTNNERIDI KERLNPELRTTCSDGMNGYISPCGGDTHPPVFRSPVAGMEDILDNEVICAIYRLPDPHSHITRPPPGVKFPKKTVGLEDMQPEPVLWHEDTGRGPRGRGN YDRHNNNHRGNFSGRQLGDASHRLVTNSLQGNRHGNHYNNHHAHGRSSYNPMQYAPPCNSSYSSNGSHDQGRRGAADYSHSRHQAAVIDPPYEVPVGTNP RYGGSRPSYERESRDQGYYPQAAPGYGHNHHQQSSNRFGAFEQRGNRFPPPQHGGHQRTHQQHPPPPGTGNRRPPYPPSNAAAGRRPGGYNRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10024327 [exp]	0	1
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10012434 [exp]	2.0	0.9049
AT2G17510		EMB2763	EMBRYO DEFECTIVE 2763, ribonuc...		Lus10029500 [exp]	2.8	0.9232
AT3G17850			Protein kinase superfamily pro...		Lus10031332 [exp]	6.5	0.9001
AT2G47390			Prolyl oligopeptidase family p...		Lus10025027 [exp]	7.6	0.8266
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Lus10038373 [exp]	8.7	0.8547
AT4G32360			Pyridine nucleotide-disulphide...		Lus10015217 [exp]	9.4	0.8112
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Lus10030142 [exp]	10.2	0.8834
AT1G20670			DNA-binding bromodomain-contai...		Lus10030739 [exp]	12.0	0.7881
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Lus10042807 [exp]	12.0	0.8701
AT1G48490			Protein kinase superfamily pro...		Lus10031906 [exp]	12.1	0.8815

Compare expression of checked genes

Lus10024327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.