Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05800 81 / 1e-16 unknown protein AT2G24960 79 / 9e-16 unknown protein AT4G02210 61 / 4e-10 unknown protein AT3G11290 55 / 3e-08 unknown protein AT3G11310 51 / 7e-07 unknown protein AT2G19220 45 / 4e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002039 [exp] 580 / 0 AT3G11290 91 / 2e-20 unknown protein Lus10025958 [exp] 117 / 2e-30 AT2G24960 102 / 4e-24 unknown protein Lus10014257 [exp] 113 / 2e-27 AT3G14820 282 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10007443 [exp] 71 / 6e-15 AT5G05800 50 / 4e-08 unknown protein Lus10024453 [exp] 69 / 4e-14 AT5G05800 50 / 7e-08 unknown protein Lus10010304 [exp] 69 / 1e-12 AT4G02210 395 / 1e-135 unknown protein Lus10013421 [exp] 61 / 6e-10 AT4G02210 418 / 1e-144 unknown protein Lus10026250 [exp] 57 / 1e-08 AT2G24960 750 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G023800 [exp] 309 / 7e-105 AT2G24960 89 / 2e-19 unknown protein Potri.002G200600 [exp] 87 / 7e-19 AT4G02210 471 / 1e-163 unknown protein Potri.004G135901 [exp] 80 / 3e-18 AT5G05800 44 / 1e-05 unknown protein Potri.006G265900 [exp] 67 / 6e-12 AT2G24960 761 / 0.0 unknown protein Potri.013G025200 [exp] 63 / 1e-10 AT2G24960 514 / 2e-168 unknown protein Potri.004G172900 [exp] 61 / 3e-10 AT2G24960 96 / 1e-21 unknown protein Potri.001G339400 [exp] 53 / 1e-07 AT5G05800 107 / 6e-26 unknown protein Potri.006G116400 [exp] 52 / 2e-07 AT5G05800 97 / 3e-22 unknown protein Potri.007G118701 [exp] 52 / 2e-07 AT5G05800 109 / 6e-27 unknown protein Potri.001G391600 [exp] 50 / 7e-07 AT5G05800 79 / 2e-16 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024329 pacid=23174974 polypeptide=Lus10024329 locus=Lus10024329.g ID=Lus10024329.BGIv1.0 annot-version=v1.0 ATGGAGGCTGAACCGCTTAATCAGCTGAAACTAGAAAGAACAAGAACAAGGTGGTCACCAGCATTGGACAAGGTGTTCGCTGACTTGATGGTGAAGCAGA TCCAACTGGGAAACAGACCAAATAGTTTCTTCGACAAGAAAACTTGGAACGCCATTCGTGACGAATTCAATAGTCAAACGGATCTCAACTTCAACAACAA TCAGTTGCGCAAGCACTTTGATGTTCTGCGAACACGCTATACCAGTTTAAAGCCCACCTCTTCTGTCCAAAATAATGACTTTGCCATCGATAATTCCTGC TCCATACAATTTGATCTGTGGGAAGATTGCACAGTGCGTTTCCGGTTCTTGTTTGCTTTTGCTTCTGAAACTCGCATTCAGTTCAGATATGTCTATTCTA TTTTTCTGATGCATAAGTCATCTATATTCCAGGCACAGTGTAGGCCAGAGACGGGCAAAGCGAAGGACTGCCCAATATACAATCAACTGTGCGTGATATT CTCAGATACATCAGGAGATGGGAAGTATGCTCAATCTAGCCACTTTGAAGAGTTAGCTGAAAATGGAACTGCGCATGCTGTTCCTGGGCAAGAAGCTTGT CATCCCGAAAATGAAGGCCTTCCTACGCCAAGGACAACGGGGGAGAGGAAAAGGAAACAGCCAATAGAAACACAGCAGTCCCTTGAAGAGCAGAACAGAA ATGACGATCACCGTGAAGCGGTGGCTGAAGCTTTGGCTGACATGGTTACGGCTTTCAAGCAGAGGAAGGTTGGTCATCGCCAGAAGAAGGATGAAAGGTA TAGCATAAGCAGTTGCATAAGTGTTTTGGATTCGATAAAGGGCATTGACCAAAAACTCTACTTTGCTGCTCTGGATCTCTTCGAAGAAGCAAAGTCGAGG GAGACGTTTATCTCCTTGAAAGGGGATGAGTTTAAGTTGGCTTGGTTGCAGGGCAAGTGTGGTATCCATAGTTTGGCTTCACTTTTTGGGTTTTAG
AA sequence Show only first row Show all	>Lus10024329 pacid=23174974 polypeptide=Lus10024329 locus=Lus10024329.g ID=Lus10024329.BGIv1.0 annot-version=v1.0 MEAEPLNQLKLERTRTRWSPALDKVFADLMVKQIQLGNRPNSFFDKKTWNAIRDEFNSQTDLNFNNNQLRKHFDVLRTRYTSLKPTSSVQNNDFAIDNSC SIQFDLWEDCTVRFRFLFAFASETRIQFRYVYSIFLMHKSSIFQAQCRPETGKAKDCPIYNQLCVIFSDTSGDGKYAQSSHFEELAENGTAHAVPGQEAC HPENEGLPTPRTTGERKRKQPIETQQSLEEQNRNDDHREAVAEALADMVTAFKQRKVGHRQKKDERYSISSCISVLDSIKGIDQKLYFAALDLFEEAKSR ETFISLKGDEFKLAWLQGKCGIHSLASLFGF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05800			unknown protein		Lus10024329 [exp]	0	1
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Lus10035184 [exp]	5.3	0.8666
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10032525 [exp]	20.8	0.8576
AT4G17510		UCH3	ubiquitin C-terminal hydrolase...		Lus10026940 [exp]	21.0	0.8506
AT3G06760			Drought-responsive family prot...		Lus10013420 [exp]	21.5	0.8443
AT5G54850			unknown protein		Lus10011150 [exp]	26.0	0.8609
AT3G50000		ATCKA2, CKA2	"casein kinase II, alpha chain...		Lus10011534 [exp]	26.1	0.8437
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Lus10017097 [exp]	28.9	0.8367
AT5G55530			Calcium-dependent lipid-bindin...		Lus10003765 [exp]	31.4	0.8526
AT3G51500			unknown protein		Lus10014816 [exp]	32.3	0.8433
AT5G14610			DEAD box RNA helicase family p...		Lus10032133 [exp]	32.9	0.8337

Compare expression of checked genes

Lus10024329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.