Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75690 147 / 5e-46 LQY1 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002040 [exp] 210 / 9e-71 AT1G75690 203 / 5e-68 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10002906 [exp] 42 / 4e-05 AT3G47650 109 / 1e-31 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G023600 [exp] 154 / 1e-48 AT1G75690 193 / 4e-64 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.005G237800 [exp] 145 / 4e-45 AT1G75690 182 / 8e-60 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024330 pacid=23175021 polypeptide=Lus10024330 locus=Lus10024330.g ID=Lus10024330.BGIv1.0 annot-version=v1.0 ATGCAATTAGCCGTAGCAGCAGCTTCGGTTCCAAGTATACAATCTCCATTCTCATGCTGCCCTCTCAAATCGTCATGTCTCTTTTCCAGAAGAAGTTTCA GCACTCAATCGCGGCCTCGTTTCGTAGTCAGAGCAATTGAGATGGATGCAAACACGGTTACTGCTTTATCAGTTGGTCTAGTCAGCGTGGCGGTAGGGAT AGGCATTCCCGTGTTCTACGAGTCTCAAATTAACAATGCTGGTGGGTTCAATTTTGGCAGTCAAAGAGGGAAAACACTCAGCCCTGCTTCCCAAAAATGC AGATTCTGCGGAGGAGGCGGGACGGTGATTGTCGATCTAGGAGGGGAAGAGAAAGAAGTGTCAAACTGCATCATCTGTGACGGTAATGGTTCTTTGACTT GCACCACATGTCAAGGCTCCGGGATTCAACCTCGCTACCTCGATCGAAGGGAATTCAAAGACGACGACTGA
AA sequence Show only first row Show all	>Lus10024330 pacid=23175021 polypeptide=Lus10024330 locus=Lus10024330.g ID=Lus10024330.BGIv1.0 annot-version=v1.0 MQLAVAAASVPSIQSPFSCCPLKSSCLFSRRSFSTQSRPRFVVRAIEMDANTVTALSVGLVSVAVGIGIPVFYESQINNAGGFNFGSQRGKTLSPASQKC RFCGGGGTVIVDLGGEEKEVSNCIICDGNGSLTCTTCQGSGIQPRYLDRREFKDDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Lus10024330 [exp]	0	1
AT5G08050			Protein of unknown function (D...		Lus10040515 [exp]	1.0	0.9455
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Lus10022257 [exp]	6.2	0.8997
AT5G54270		LHCB3*1, LHCB3*...	light-harvesting chlorophyll B...		Lus10037875 [exp]	6.2	0.9182
AT2G32040			Major facilitator superfamily ...		Lus10006106 [exp]	7.3	0.8997
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Lus10002040 [exp]	7.6	0.9191
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Lus10014093 [exp]	8.0	0.9115
AT1G45474		LHCA5	photosystem I light harvesting...		Lus10021730 [exp]	9.2	0.9155
AT2G21280		GC1, ATSULA	GIANT CHLOROPLAST 1, NAD(P)-bi...		Lus10018055 [exp]	11.0	0.9082
AT4G15110		CYP97B3	"cytochrome P450, family 97, s...		Lus10039040 [exp]	13.5	0.9130
					Lus10030090 [exp]	13.9	0.9161

Compare expression of checked genes

Lus10024330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.