Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25180 362 / 7e-120 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) AT5G25140 348 / 8e-115 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT3G26270 346 / 8e-114 CYP71B25 "cytochrome P450, family 71, subfamily B, polypeptide 25", cytochrome P450, family 71, subfamily B, polypeptide 25 (.1) AT5G25120 344 / 5e-113 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT5G25130 342 / 3e-112 CYP71B12 "cytochrome P450, family 71, subfamily B, polypeptide 12", cytochrome P450, family 71, subfamily B, polypeptide 12 (.1) AT3G26300 342 / 5e-112 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT1G13080 339 / 5e-111 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT1G13110 334 / 3e-109 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT4G13770 330 / 1e-107 REF2, CYP83A1 REDUCED EPIDERMAL FLUORESCENCE 2, "cytochrome P450, family 83, subfamily A, polypeptide 1", cytochrome P450, family 83, subfamily A, polypeptide 1 (.1) AT3G26320 330 / 2e-107 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033633 [exp] 719 / 0 AT3G26330 362 / 4e-120 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10017676 [exp] 716 / 0 AT3G26300 367 / 3e-122 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10017677 [exp] 709 / 0 AT3G26300 353 / 2e-116 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10033634 [exp] 685 / 0 AT5G25180 363 / 1e-120 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) Lus10029035 [exp] 475 / 1e-163 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10016601 [exp] 459 / 2e-157 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10034230 [exp] 455 / 6e-156 AT1G13110 400 / 9e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10030924 [exp] 440 / 5e-150 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10002885 [exp] 433 / 3e-147 AT3G48280 396 / 2e-133 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G223500 [exp] 439 / 7e-150 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 434 / 7e-148 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 427 / 2e-145 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.007G074900 [exp] 422 / 4e-143 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 421 / 9e-143 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 419 / 3e-142 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 418 / 1e-141 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 414 / 4e-140 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 414 / 4e-140 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365300 [exp] 382 / 1e-128 AT3G26300 291 / 7e-94 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10024331 pacid=23175011 polypeptide=Lus10024331 locus=Lus10024331.g ID=Lus10024331.BGIv1.0 annot-version=v1.0 ATGGATCTCCAACAAATTCAAATCATATTCTCCCAGCCATTACAATTTCTGATCATTACCCTTATGATCACCATATCCGTGATCTCAATCAAGCTCAGCA AATCACAAAAACCCACTTCAATTTCTTACACTAACCTACCTCCAGCTCCATGGAAGCTCCCCATAATCGGACACATCCACCATTTCTTGGTCACGGCCCA GCCACCCCACCGCCTCCTCCGAGAGCTATCCCGAAAGCACGGGGACGTCATCCGCCTGACCCTCGGGGACACGCCCCACGTCGTCGTTTCGTCAGCCGAG GCAGCAAAGCAGGTCATGAGGACCCACGACGTCAAATTCGCTCAGCGTCCCATGCACCCTCACCATTCAAAGGTCATGTGGGGCGCTAGCAACCTCATCC ACACTCCCTACGGCGACTACTGGCGGCAACTCCGACGGATCGCCACTCTCGAGCTGCTCACTTCCCGACGCGTGGAGTCCTTCTGCTCGATCAGACAGGC CGAGGTGGCTCGTCTTGTCAGAGAGATCAGAGAACATGCCAAAGTGTTCGTTTCGATGCTAGATCCATCCCTTGAAGGATCCGTGATCGACCTATCCAAA AAGGTGTTCAACACGACATACAACATAATATTGAGGGCGATATTTGGGGACGTGTGGTCGGAGCAGGAAGAGTTCATAAAGGTGGCGAAGGAGATCGTGG AGTACGGTGGAGGGTTCGGGATCTCCTACTTGTTCCCTTCCTGTAAGTTGGTGCAGAGACTAGCGGGGATGGAAGATTGGCTGAACAGGATTCATGTGGC TATCGATCGGTTGATTGAAGGCATCATCACCCACCATAGAAACAAGATGAAATATGACCAAGGTGGTCATGAAGATCTACTGGGTGTTCTTTTGGATCTT CAACAAGATGAGACTGCTCTTGGTTTCAAGTTATCCAACAACTCCATCAAAGGTTTCCTTCTGGACATATTCCTCGCCGGAAGCGAAACACCATCAGCGC TCATAGAATGGACAATGTCGGAGATGCTGAAGCACCCACACGTACTCCAAAAGGCACAGTCCGAAGTAAGAAAACTCTTCGTCGATAAAGGTCAGGTCGA CGAGGCCGATATCCACCAACTCGACTACTTAAAACTCGTCATCAAAGAGACTCTCAGACTACACACCCCAGCACCTCTACTACTCCCCCGGGAATGCATA GAAGAGTGTCGAGTTGGGGGCTACGACATCCCTTTGAAGACCACGGTGGTGGTCAATGTCTGGGCTGTCGCTAGGGACCCTCGTTATTGGGGTCCAGATG CTGAGGTGTTCAAGCCTGATAGGTTCATTGGCAGCAGTGTGAGTTACAAAGGTGGGGACTTTGAGTTTCTTCCGTTTGGTGCTGGGAGAAGGATGTGTCC TGGAATAGGATTCGGGCTTGCATCTGTCGAGCTTTGTCTTGCGAATTTGTTGTTTCATTTTGACTGGAAGCTGCCGGTTGGAATGGAACCGAATAGCCTG AATATGGATGAACTGTTTGGGGTTACGATCAGGAGGAAGGAGAAGTTGGAACTCATTCCAGTTGTTTACAACAACTCTTAA
AA sequence Show only first row Show all	>Lus10024331 pacid=23175011 polypeptide=Lus10024331 locus=Lus10024331.g ID=Lus10024331.BGIv1.0 annot-version=v1.0 MDLQQIQIIFSQPLQFLIITLMITISVISIKLSKSQKPTSISYTNLPPAPWKLPIIGHIHHFLVTAQPPHRLLRELSRKHGDVIRLTLGDTPHVVVSSAE AAKQVMRTHDVKFAQRPMHPHHSKVMWGASNLIHTPYGDYWRQLRRIATLELLTSRRVESFCSIRQAEVARLVREIREHAKVFVSMLDPSLEGSVIDLSK KVFNTTYNIILRAIFGDVWSEQEEFIKVAKEIVEYGGGFGISYLFPSCKLVQRLAGMEDWLNRIHVAIDRLIEGIITHHRNKMKYDQGGHEDLLGVLLDL QQDETALGFKLSNNSIKGFLLDIFLAGSETPSALIEWTMSEMLKHPHVLQKAQSEVRKLFVDKGQVDEADIHQLDYLKLVIKETLRLHTPAPLLLPRECI EECRVGGYDIPLKTTVVVNVWAVARDPRYWGPDAEVFKPDRFIGSSVSYKGGDFEFLPFGAGRRMCPGIGFGLASVELCLANLLFHFDWKLPVGMEPNSL NMDELFGVTIRRKEKLELIPVVYNNS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25180		CYP71B14	"cytochrome P450, family 71, s...		Lus10024331 [exp]	0	1
AT4G25950		VATG3	vacuolar ATP synthase G3 (.1)		Lus10009452 [exp]	1.0	0.9531
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10023036 [exp]	4.0	0.8273
AT1G06340			Plant Tudor-like protein (.1)		Lus10039027 [exp]	4.9	0.8273
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10026169 [exp]	5.7	0.8273
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10018718 [exp]	6.3	0.8273
AT2G44220			Protein of Unknown Function (D...		Lus10006862 [exp]	6.9	0.8273
AT4G26466		LRE	lorelei (.1)		Lus10011066 [exp]	7.9	0.7564
AT5G28823			unknown protein		Lus10040056 [exp]	8.0	0.7105
AT3G60680			Plant protein of unknown funct...		Lus10034935 [exp]	9.0	0.6810
					Lus10025786 [exp]	9.5	0.6749

Compare expression of checked genes

Lus10024331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.