Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42560 296 / 2e-100 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) AT1G19950 264 / 2e-87 HVA22H HVA22-like protein H (ATHVA22H) (.1) AT1G75700 251 / 3e-84 HVA22G HVA22-like protein G (.1) AT2G36020 191 / 2e-59 HVA22J HVA22-like protein J (.1) AT4G36720 62 / 2e-11 HVA22K HVA22-like protein K (.1) AT5G50720 52 / 3e-08 ATHVA22E ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) AT1G74520 52 / 8e-08 ATHVA22A HVA22 homologue A (.1) AT2G42820 51 / 8e-08 HVA22F HVA22-like protein F (.1) AT4G24960 50 / 9e-08 ATHVA22D ARABIDOPSIS THALIANA HVA22 HOMOLOGUE D, HVA22 homologue D (.1.2.3) AT1G69700 49 / 7e-07 ATHVA22C HVA22 homologue C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033152 [exp] 330 / 2e-113 AT5G42560 328 / 7e-113 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) Lus10034519 [exp] 328 / 1e-112 AT5G42560 324 / 2e-111 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) Lus10016974 [exp] 195 / 1e-61 AT2G36020 210 / 2e-68 HVA22-like protein J (.1) Lus10021299 [exp] 193 / 9e-61 AT2G36020 206 / 6e-67 HVA22-like protein J (.1) Lus10004215 [exp] 187 / 2e-59 AT2G36020 196 / 6e-64 HVA22-like protein J (.1) Lus10029419 [exp] 173 / 7e-53 AT2G36020 198 / 1e-63 HVA22-like protein J (.1) Lus10010093 [exp] 66 / 9e-13 AT4G36720 202 / 2e-66 HVA22-like protein K (.1) Lus10007215 [exp] 65 / 2e-12 AT4G36720 196 / 2e-64 HVA22-like protein K (.1) Lus10043186 [exp] 60 / 6e-11 AT5G50720 169 / 1e-55 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G023500 [exp] 319 / 2e-109 AT5G42560 296 / 2e-100 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) Potri.005G237900 [exp] 312 / 1e-106 AT5G42560 274 / 1e-91 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) Potri.004G166800 [exp] 231 / 4e-75 AT1G75700 234 / 3e-78 HVA22-like protein G (.1) Potri.016G072600 [exp] 201 / 2e-64 AT2G36020 210 / 9e-69 HVA22-like protein J (.1) Potri.006G205300 [exp] 200 / 3e-63 AT2G36020 228 / 1e-74 HVA22-like protein J (.1) Potri.009G113400 [exp] 73 / 2e-15 AT4G36720 241 / 1e-81 HVA22-like protein K (.1) Potri.007G029300 [exp] 69 / 2e-13 AT4G36720 252 / 2e-85 HVA22-like protein K (.1) Potri.015G099700 [exp] 57 / 9e-10 AT5G50720 166 / 5e-54 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Potri.015G062800 [exp] 57 / 9e-10 AT1G74520 255 / 4e-88 HVA22 homologue A (.1) Potri.012G101600 [exp] 56 / 1e-09 AT5G50720 133 / 3e-41 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03134 [flax] [poplar] TB2_DP1_HVA22 TB2/DP1, HVA22 family
Representative CDS sequence Show only first row Show all	>Lus10024332 pacid=23175017 polypeptide=Lus10024332 locus=Lus10024332.g ID=Lus10024332.BGIv1.0 annot-version=v1.0 ATGTTGGGGTCATTTCTTACTAGAGGACTTGTGTTGGTTTTTGGCTATGCTTACCCAGCATATGAATGCTATAAAACTGTTGAACTGAATAAACCAGAGA TCGAGCAGCTCCGCTTTTGGTGCCAGTATTGGATTTTGGTTGCTATGTTGACTGTTTCAGAGAGAATTGGAGATGCTTTTGTTTCATGGGTTCCCATGTA CAGTGAAGCTAAGTTGGCATTTTTTATTTACTTGTGGTACCCTAAAACCAAGGGAAGTACCTATGTGTACGAGTCCTTCTTCAGACCCTATATTGCAAAA CACGAAAATGAAATTGATCAAAACCTGCTGGAGCTGAGGACAAAGGCTGGAGACATGGCAATAGTGTACTGGCAAAGGGCTGCTAGCTATGGTCAGACGA GAGTTTTTGACATTTTGCAGTTTGTTGCTGCACAATCAACCCCAAGACCTCAAGCTCAGCAGCAGCCGCAAGGTCCCAGGGCTCGCCAAATTTCCAATCC TCCTAACCGTCAACCTTCTAATGCACGCAATCGTCAACCGGCAACATCAAATCCGGGGATGGAAGAGCCCCCATCTCCCACTTCCAGTACATCATCAAGT CAGCATCAGATGGAACCAGCGGATGAGGTGGGTTCCGCTGAAGCCACTACTTCTCCAGCAGTAACTCAAAATTCACCAAGAGCTCCGAATGCTCCAAAAG CTGTAAATGCACCAAAAAGATCACTTTCTGCACCATCTGTACCACCGAATCCTTCTGCACAAAACAAGACAGAACTGATGCAGATAGAAGCATCACCTTC ATCATCTTCATCAAATGACAAAGTCACGGACTCTGCTCCGACAGAGACGATCATGGAAGAGGCGATCCGGGCTACTCGTGGAAGATTGAGGAAAACCAAA TCAATAACGAAGTGA
AA sequence Show only first row Show all	>Lus10024332 pacid=23175017 polypeptide=Lus10024332 locus=Lus10024332.g ID=Lus10024332.BGIv1.0 annot-version=v1.0 MLGSFLTRGLVLVFGYAYPAYECYKTVELNKPEIEQLRFWCQYWILVAMLTVSERIGDAFVSWVPMYSEAKLAFFIYLWYPKTKGSTYVYESFFRPYIAK HENEIDQNLLELRTKAGDMAIVYWQRAASYGQTRVFDILQFVAAQSTPRPQAQQQPQGPRARQISNPPNRQPSNARNRQPATSNPGMEEPPSPTSSTSSS QHQMEPADEVGSAEATTSPAVTQNSPRAPNAPKAVNAPKRSLSAPSVPPNPSAQNKTELMQIEASPSSSSSNDKVTDSAPTETIMEEAIRATRGRLRKTK SITK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42560			Abscisic acid-responsive (TB2/...		Lus10024332 [exp]	0	1
AT1G52280		AtRABG3d	RAB GTPase homolog G3D (.1)		Lus10025790 [exp]	6.9	0.6688
AT5G27750			F-box/FBD-like domains contain...		Lus10035326 [exp]	15.0	0.5587
AT1G51650			ATP synthase epsilon chain, mi...		Lus10034841 [exp]	16.4	0.6218
AT1G06340			Plant Tudor-like protein (.1)		Lus10027325 [exp]	16.7	0.5968
AT3G50860			Clathrin adaptor complex small...		Lus10041742 [exp]	17.8	0.6279
AT2G34050			unknown protein		Lus10020428 [exp]	19.7	0.6092
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10000852 [exp]	20.5	0.6101
AT2G46580			Pyridoxamine 5'-phosphate oxid...		Lus10030234 [exp]	25.7	0.6232
AT2G47830			Cation efflux family protein (...		Lus10040922 [exp]	52.5	0.5887
AT5G16890			Exostosin family protein (.1)		Lus10013787 [exp]	55.8	0.5845

Compare expression of checked genes

Lus10024332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.