Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75710 384 / 2e-133 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G54630 216 / 2e-67 C2H2ZnF zinc finger protein-related (.1) AT4G27240 214 / 4e-67 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT2G29660 176 / 9e-53 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G11490 144 / 1e-40 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G62520 117 / 3e-31 unknown protein AT4G22560 111 / 4e-29 unknown protein AT4G12450 108 / 5e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034522 [exp] 447 / 2e-158 AT1G75710 450 / 1e-156 C2H2-like zinc finger protein (.1) Lus10033148 [exp] 444 / 5e-157 AT1G75710 442 / 3e-153 C2H2-like zinc finger protein (.1) Lus10028083 [exp] 274 / 5e-90 AT1G75710 284 / 4e-91 C2H2-like zinc finger protein (.1) Lus10025632 [exp] 271 / 3e-89 AT1G75710 284 / 2e-91 C2H2-like zinc finger protein (.1) Lus10043080 [exp] 221 / 8e-70 AT5G54630 566 / 0.0 zinc finger protein-related (.1) Lus10018388 [exp] 176 / 8e-53 AT5G54630 336 / 5e-112 zinc finger protein-related (.1) Lus10018219 [exp] 176 / 2e-52 AT2G29660 323 / 4e-108 zinc finger (C2H2 type) family protein (.1) Lus10040685 [exp] 174 / 1e-51 AT2G29660 322 / 9e-108 zinc finger (C2H2 type) family protein (.1) Lus10007625 [exp] 166 / 5e-47 AT4G21320 400 / 6e-136 HEAT-STRESS-ASSOCIATED 32, Aldolase-type TIM barrel family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G238300 [exp] 448 / 4e-159 AT1G75710 478 / 5e-168 C2H2-like zinc finger protein (.1) Potri.002G023200 [exp] 416 / 2e-146 AT1G75710 439 / 1e-152 C2H2-like zinc finger protein (.1) Potri.005G173400 [exp] 303 / 8e-102 AT1G75710 291 / 3e-94 C2H2-like zinc finger protein (.1) Potri.002G087500 [exp] 300 / 8e-101 AT1G75710 294 / 2e-95 C2H2-like zinc finger protein (.1) Potri.011G131300 [exp] 213 / 1e-66 AT5G54630 509 / 3e-179 zinc finger protein-related (.1) Potri.001G415600 [exp] 212 / 5e-66 AT5G54630 520 / 0.0 zinc finger protein-related (.1) Potri.004G030800 [exp] 197 / 8e-61 AT5G54630 385 / 3e-131 zinc finger protein-related (.1) Potri.001G249900 [exp] 196 / 1e-60 AT2G29660 351 / 1e-119 zinc finger (C2H2 type) family protein (.1) Potri.009G043900 [exp] 193 / 2e-59 AT2G29660 332 / 4e-112 zinc finger (C2H2 type) family protein (.1) Potri.001G121600 [exp] 124 / 5e-34 AT4G22560 258 / 5e-86 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024333 pacid=23174880 polypeptide=Lus10024333 locus=Lus10024333.g ID=Lus10024333.BGIv1.0 annot-version=v1.0 ATGCAGTTCAGGAAGCTCTCCGGTTGTTATGAATGTCACACTATCGTTGACCCCATCAGCCGGTTTCCAACTCCAAGGACCACAATTTGCGCTTGTTCTC AGTGTGGTGAGGTGTTCCACAAGATAGAAAGCTTGGAACTCCATCAGAGAGTTCGCCATGCCGTTTCTGAACTGGGTGTGGAGGACTCGGGACGAAACAT CGTGGAGATAATCTTCAAATCGAGCTGGATGAAGAAGGATAGTTCCATCTGTCACATCGAACGCATACTGAAGGTCCACAATACTCAGCGGACAATCCAA CGGTTTGAGGACTGCAGAGACGCAGTCAAATCCCGTGCGCTGACTGGCATACGAAAGAATCCCAGGTGTGCGGCTGATGGAAACGAGCTTCTCCGCTTCC ATTGCACGACCCTCACTTGCTCCCTGGGAGCGCGTGGCGGTTCCAGCCTCTGCGGCGCCATCCCTGGGTGCGGTGTCTGCACTGCCATCCGCCATGGGTT CCAAGGGAAGGAGATGCGAGGAGTCCGGACCACCGCCAGCAGTGGTAGGGCCCACGACTCATTGGTCGGGTGCACGGACGGGCGCAGGGCCATGCTCGTG TGTCGGGTGATCGCAGGGAGGGTGAAACGCGTGGCGGCTGCGGTGGAGGATGAGAACGCGCCGTCCGATGATGGCGGCGGGGTGTACGATTCAGTGGCGG GAACGGCGGGAGTGTACTCGAATCTAGAGGAGCTGTTTGTGTTTAATCCTAAGGCCATCCTGCCTTGTTTCGTTGTCATTTACAATGCGGTGGAATCATG A
AA sequence Show only first row Show all	>Lus10024333 pacid=23174880 polypeptide=Lus10024333 locus=Lus10024333.g ID=Lus10024333.BGIv1.0 annot-version=v1.0 MQFRKLSGCYECHTIVDPISRFPTPRTTICACSQCGEVFHKIESLELHQRVRHAVSELGVEDSGRNIVEIIFKSSWMKKDSSICHIERILKVHNTQRTIQ RFEDCRDAVKSRALTGIRKNPRCAADGNELLRFHCTTLTCSLGARGGSSLCGAIPGCGVCTAIRHGFQGKEMRGVRTTASSGRAHDSLVGCTDGRRAMLV CRVIAGRVKRVAAAVEDENAPSDDGGGVYDSVAGTAGVYSNLEELFVFNPKAILPCFVVIYNAVES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10024333 [exp]	0	1
AT2G45750			S-adenosyl-L-methionine-depend...		Lus10005764 [exp]	6.6	0.8856
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	7.5	0.9028
AT2G21100			Disease resistance-responsive ...		Lus10034479 [exp]	8.7	0.9010
AT2G21100			Disease resistance-responsive ...		Lus10025065 [exp]	8.8	0.9001
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Lus10041863 [exp]	11.0	0.8999
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10021320 [exp]	14.1	0.8892
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10037178 [exp]	14.7	0.8972
					Lus10010684 [exp]	16.4	0.8871
AT3G14470			NB-ARC domain-containing disea...		Lus10022792 [exp]	16.6	0.8990
					Lus10003852 [exp]	18.3	0.8814

Compare expression of checked genes

Lus10024333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.