Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60500 748 / 0 DRP4C Dynamin related protein 4C (.1) AT1G60530 413 / 7e-141 DRP4A Dynamin related protein 4A (.1) AT4G33650 161 / 2e-41 APEM1, DRP3A, ADL2 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) AT2G14120 155 / 2e-39 DRP3B dynamin related protein (.1.2.3) AT3G60190 146 / 7e-37 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT1G14830 145 / 1e-36 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT2G44590 142 / 1e-35 ADL1D DYNAMIN-like 1D (.1.2.3) AT3G61760 130 / 1e-31 ADL1B DYNAMIN-like 1B (.1) AT5G42080 127 / 2e-31 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) AT1G53140 82 / 6e-16 DRP5A Dynamin related protein 5A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025903 [exp] 728 / 0 AT1G60500 466 / 1e-157 Dynamin related protein 4C (.1) Lus10014041 [exp] 153 / 1e-38 AT4G33650 1081 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10019875 [exp] 152 / 2e-38 AT4G33650 1030 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10002407 [exp] 152 / 3e-38 AT4G33650 1079 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10027906 [exp] 150 / 8e-38 AT4G33650 1080 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10012076 [exp] 146 / 2e-36 AT4G33650 1045 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10019170 [exp] 144 / 7e-36 AT1G14830 1131 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10029001 [exp] 144 / 9e-36 AT1G14830 1061 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10003873 [exp] 132 / 5e-32 AT5G42080 1137 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G024200 [exp] 902 / 0 AT1G60500 830 / 0.0 Dynamin related protein 4C (.1) Potri.003G024600 [exp] 901 / 0 AT1G60500 835 / 0.0 Dynamin related protein 4C (.1) Potri.003G024900 [exp] 896 / 0 AT1G60500 827 / 0.0 Dynamin related protein 4C (.1) Potri.013G124600 [exp] 834 / 0 AT1G60500 775 / 0.0 Dynamin related protein 4C (.1) Potri.001G095900 [exp] 829 / 0 AT1G60500 798 / 0.0 Dynamin related protein 4C (.1) Potri.013G119900 [exp] 828 / 0 AT1G60500 751 / 0.0 Dynamin related protein 4C (.1) Potri.013G120000 [exp] 828 / 0 AT1G60500 748 / 0.0 Dynamin related protein 4C (.1) Potri.003G024800 [exp] 642 / 0 AT1G60500 607 / 0.0 Dynamin related protein 4C (.1) Potri.007G118300 [exp] 158 / 2e-40 AT4G33650 1067 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.017G041800 [exp] 154 / 9e-39 AT4G33650 1070 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01031 [flax] [poplar] Dynamin_M Dynamin central region CL0023 [flax] [poplar] P-loop_NTPase PF00350 [flax] [poplar] Dynamin_N Dynamin family CL0023 [flax] [poplar] PF02212 [flax] [poplar] GED Dynamin GTPase effector domain
Representative CDS sequence Show only first row Show all	>Lus10024334 pacid=23175028 polypeptide=Lus10024334 locus=Lus10024334.g ID=Lus10024334.BGIv1.0 annot-version=v1.0 ATGGGCAATGAAATAGAATCCCTCAGCCCCTCATCCTCGTCCCTCGTCCCTTACGAAGCCGACAATCATCAAATAGTCCCAATCGTGTCGTCATACAATG ACCAGATCCGACCTCTCCTCGACGCCATCGACAAGCTCCGACACCTAAATGTCGCAGCCAAGGAAGGTATACAGCTCCCCACCATCGTCGTGGTCGGCGA CCAATCATCGGGCAAGTCTAGCGTGCTTGAATCTCTCGCCGGAATCAGCCTTCCACGTGGCCAAGGAATCTGTACTCGAGTTCCACTCATCATGCGCCTC CACCACCACTCCCATCCCGTTCCGGAGCTCTCTCTGCAGTATACTTCAAATGGGTCCACCAAAACCGTCTCTACCGACGAAGCACATGTGGCTGAGTCCA TCAACTTGGCCACGGAAGAGATTGCAGGGTCCGGTAAAGGGATATCAAACAATCCTTTGACATTGATCGTGAGGAAGAACGGAGTCCCTGATCTCACAAT GGTTGATCTCCCCGGGATTACCCGAGTTCCGGTCCATGGCCAGCCCGAGGACATTTACGAGCAAGTCAGAGAGACGATAATGGAGTACATCAAACCGGAG GAGAGCATCATACTAAACGTGCTGTCTGCGACCGTTGATTTCTCAACGTGTGAGTCCATCAGGATGTCGCAGAAGGTTGATAAAACAGGGGATAGGACTC TGGCTGTTGTTACCAAAGTTGATAAATCTCCTGAAGGGCTGTTGGAAAAGGTGATGGCTGATGATGTTGGGATTGGACTTGGTTATGTTTGCGTCAGGAA TCGGATTGGCGATGAGACTTACGAGGATGCGAGGAATGAAGAGGCTGGTCTGTTTGATTCTCATCCTCTGCTGTCCAAGATCGACAAGTCGATCGTCGGG GTTCCTGTCTTGGCCCAGAAGCTTGTCCAAATTCAGGCTGCCATCATTTCGAGGTGCTTGCCGGAGATAGTGAAAAAGATCAATGAGAAGCTAGCCATGA ATATTCAAGAGGTAAACAAAATGCCGAGGACCATGAGTTCCAAAGGTGAGGCAGTGACTACTTTTATGGGGATACTGGGGTCTTCCAAAGATTCGTTGAG GAGGATTATTATCAGAGGAGAGTTCAACCAGTACCCTGAAGATTTACAGATGCACTGTACTGCAAGACTGGCAGAAATGCTGGACAAATTCTCTGCCCAA CTCAACAATGCCCCGGAGAGCGATGAGCTTCTGAATTTCCTGGAGGAGGAGATCAAGATTCTAGAGGAAGCCAAAGGGATCAGGCTTCCCAATTACATGT CTTCGGGAGCATTCTTGGCTCTTCTCCAGAGGAAAATACAAGGAATATCCTGGATTCCTCTTGCTTTTGTTGACAATGTCTGGAACTATATTGAAGGTGT TGTAATATCTGTTCTGATGCAGCGGTGTGAAAGTTATCACCGACTCCAGCTATCCACAAGGAGAACGTGTCACAACCTCATCTCCAGGATGCGAGAGCGG TCTGCGAATTGGGTGAATGAGATACTTGAAATGGAGAAAGCAACGGATTACACATGTAATCCCGAGTACCTGACTGAGTGGAACTCACTCTTGGCTCTGA GGCATGAGTTCATAACATCGGTAAAACAAGACACCCAGACAATGATTACGGGTTTTGGTGTTGTGGCAGTCGGAGATGCTGTGAAGAAGAGCCAGGTTCT GGACCAAGCTTTTGATCTGAGGATGAGGATTGTGACGTATTGGAAGATAGTGAGGAGGAGGCTGGTGGATTCAATGGCTCTTCACATTCAGTTGTGCGTG AGGAACTTGGTGGACATGGAGCTTGAGAAGGAACTTGTGAATGAGCTGATGGGAAGTAGCCACGGTGCTGGAGCAATAGAGAAGGTACTTGAGGAGTCCC CATCCGTGGCGGCAAAGAGGGACAAGCTTAACGGAAGCATCCAGCTGCTTAGGGAGTCCAAGGAGATCCTCGCAACCATCATGGACAGGATTGCTAGTAG TAGTCACTCTGCTTAG
AA sequence Show only first row Show all	>Lus10024334 pacid=23175028 polypeptide=Lus10024334 locus=Lus10024334.g ID=Lus10024334.BGIv1.0 annot-version=v1.0 MGNEIESLSPSSSSLVPYEADNHQIVPIVSSYNDQIRPLLDAIDKLRHLNVAAKEGIQLPTIVVVGDQSSGKSSVLESLAGISLPRGQGICTRVPLIMRL HHHSHPVPELSLQYTSNGSTKTVSTDEAHVAESINLATEEIAGSGKGISNNPLTLIVRKNGVPDLTMVDLPGITRVPVHGQPEDIYEQVRETIMEYIKPE ESIILNVLSATVDFSTCESIRMSQKVDKTGDRTLAVVTKVDKSPEGLLEKVMADDVGIGLGYVCVRNRIGDETYEDARNEEAGLFDSHPLLSKIDKSIVG VPVLAQKLVQIQAAIISRCLPEIVKKINEKLAMNIQEVNKMPRTMSSKGEAVTTFMGILGSSKDSLRRIIIRGEFNQYPEDLQMHCTARLAEMLDKFSAQ LNNAPESDELLNFLEEEIKILEEAKGIRLPNYMSSGAFLALLQRKIQGISWIPLAFVDNVWNYIEGVVISVLMQRCESYHRLQLSTRRTCHNLISRMRER SANWVNEILEMEKATDYTCNPEYLTEWNSLLALRHEFITSVKQDTQTMITGFGVVAVGDAVKKSQVLDQAFDLRMRIVTYWKIVRRRLVDSMALHIQLCV RNLVDMELEKELVNELMGSSHGAGAIEKVLEESPSVAAKRDKLNGSIQLLRESKEILATIMDRIASSSHSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Lus10024334 [exp]	0	1
					Lus10041665 [exp]	3.2	0.8916
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10016398 [exp]	10.5	0.8601
AT5G05490		SYN1 BP5, SYN1 ...	SYNAPTIC 1, DETERMINATE, INFER...		Lus10014204 [exp]	13.7	0.9205
AT4G20780		CML42	calmodulin like 42 (.1)		Lus10003239 [exp]	14.4	0.8384
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10002191 [exp]	29.1	0.8682
AT1G06260			Cysteine proteinases superfami...		Lus10039901 [exp]	31.8	0.8630
					Lus10001031 [exp]	47.9	0.8448
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10001383 [exp]	66.3	0.8108
AT2G23910			NAD(P)-binding Rossmann-fold s...		Lus10020372 [exp]	71.0	0.7992
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10016528 [exp]	71.1	0.8133

Compare expression of checked genes

Lus10024334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.