Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75720 77 / 1e-17 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) AT3G51220 57 / 2e-10 Plant protein of unknown function (DUF827) (.1) AT2G17940 57 / 7e-10 Plant protein of unknown function (DUF827) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036971 [exp] 187 / 8e-61 AT1G75720 75 / 3e-17 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Lus10028461 [exp] 77 / 7e-17 AT2G17940 104 / 3e-27 Plant protein of unknown function (DUF827) (.1) Lus10041916 [exp] 77 / 8e-17 AT2G17940 102 / 2e-26 Plant protein of unknown function (DUF827) (.1) Lus10022531 [exp] 44 / 3e-05 AT5G55860 573 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10016626 [exp] 44 / 3e-05 AT5G55860 577 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10015482 [exp] 40 / 0.0007 AT1G58070 108 / 6e-28 unknown protein Lus10019953 [exp] 40 / 0.0009 AT1G58070 99 / 3e-24 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G023000 [exp] 115 / 6e-32 AT1G75720 108 / 2e-29 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Potri.005G238500 [exp] 109 / 1e-29 AT1G75720 82 / 3e-19 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Potri.005G114400 [exp] 86 / 8e-21 AT2G17940 111 / 2e-30 Plant protein of unknown function (DUF827) (.1) Potri.003G009400 [exp] 46 / 3e-06 AT1G58070 48 / 1e-06 unknown protein Potri.004G222800 [exp] 44 / 3e-05 AT1G58070 60 / 1e-10 unknown protein Potri.001G369200 [exp] 44 / 4e-05 AT5G55860 516 / 4e-176 Plant protein of unknown function (DUF827) (.1) Potri.019G021000 [exp] 42 / 9e-05 AT1G75720 42 / 8e-05 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024335 pacid=23174932 polypeptide=Lus10024335 locus=Lus10024335.g ID=Lus10024335.BGIv1.0 annot-version=v1.0 ATGGGATCGAACGAAGGAGTGATGAAGCGGGCTGGAGTTGACACTCGGGCGCCATTCCGATCAGTGAAAGAGGCCGTCACGTTGTTCGGGGAGAAAGTTC TGGCCGGCGAGCTTTACCCCAACAACAAGCTTAAACAGCAGGTTGGTCGTAATGGAAACCTAGGGACAATGACATCTCAGCTGGAAGAAACAAAACAGAG TTTGGCAAAGGCAAAGGAGGAAAGCACACAAATGGCGAGCTGTCTCTCCCATCTTAAACAAGAGCTTGAACAAACAAAGCAAGAGCTCCAAAGACTCAAG CAGCTGAAGGAAGTCCAGATGAAGGAATCTAGCTTCTCGATTGATCCGCAATCCGACATCCACCACGGCGAACAAGAAGTGGAACTAGTGATGGTACCAG ACGAAGATGTGGAGTTTCAGAAGAAGAGGTACGTGACATTTGCTAATAATCAAGGAGTATTTGATAATGATGATAATGATCAGAGGCTGGAGAGGCATCC TTCTTTGAGAAAGAAGAAGAAGAAGCCGTTGATTCCTTTGATTATTGGAGGACTCTTCTCCTCTTCTAAGAGAAAGGGACACCATCACCACCATGAAATT GCTTGA
AA sequence Show only first row Show all	>Lus10024335 pacid=23174932 polypeptide=Lus10024335 locus=Lus10024335.g ID=Lus10024335.BGIv1.0 annot-version=v1.0 MGSNEGVMKRAGVDTRAPFRSVKEAVTLFGEKVLAGELYPNNKLKQQVGRNGNLGTMTSQLEETKQSLAKAKEESTQMASCLSHLKQELEQTKQELQRLK QLKEVQMKESSFSIDPQSDIHHGEQEVELVMVPDEDVEFQKKRYVTFANNQGVFDNDDNDQRLERHPSLRKKKKKPLIPLIIGGLFSSSKRKGHHHHHEI A

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75720			Plant protein of unknown funct...		Lus10024335 [exp]	0	1
AT1G14730			Cytochrome b561/ferric reducta...		Lus10019135 [exp]	3.5	0.9508
AT5G18970			AWPM-19-like family protein (....		Lus10001116 [exp]	3.7	0.9489
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009445 [exp]	7.4	0.9360
AT5G24620			Pathogenesis-related thaumatin...		Lus10032914 [exp]	8.7	0.9416
AT1G75260			oxidoreductases, acting on NAD...		Lus10033210 [exp]	8.7	0.9439
AT5G18970			AWPM-19-like family protein (....		Lus10021949 [exp]	9.5	0.9358
AT3G25290			Auxin-responsive family protei...		Lus10000915 [exp]	12.5	0.9192
AT5G24620			Pathogenesis-related thaumatin...		Lus10015591 [exp]	13.3	0.9290
AT4G15450			Senescence/dehydration-associa...		Lus10011127 [exp]	14.6	0.8606
AT5G67550			unknown protein		Lus10011544 [exp]	15.9	0.9250

Compare expression of checked genes

Lus10024335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.