Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47840 629 / 0 HXK3 hexokinase 3 (.1) AT4G29130 538 / 0 GIN2, ATHXK1 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) AT2G19860 523 / 0 ATHXK2 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) AT1G50460 435 / 9e-149 ATHKL1, HKL1 hexokinase-like 1 (.1) AT3G20040 419 / 1e-142 HKL2, ATHXK4 HEXOKINASE-LIKE 2, Hexokinase (.1) AT4G37840 308 / 2e-99 HKL3 hexokinase-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002041 [exp] 976 / 0 AT1G47840 643 / 0.0 hexokinase 3 (.1) Lus10038287 [exp] 520 / 0 AT4G29130 734 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10037588 [exp] 506 / 2e-176 AT4G29130 709 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10012946 [exp] 501 / 2e-174 AT2G19860 701 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10006843 [exp] 490 / 2e-170 AT4G29130 710 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10005019 [exp] 422 / 3e-143 AT1G50460 670 / 0.0 hexokinase-like 1 (.1) Lus10025815 [exp] 416 / 7e-140 AT2G19860 582 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10019038 [exp] 409 / 2e-138 AT1G50460 636 / 0.0 hexokinase-like 1 (.1) Lus10011584 [exp] 258 / 3e-80 AT4G37840 374 / 1e-125 hexokinase-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G238600 [exp] 794 / 0 AT1G47840 644 / 0.0 hexokinase 3 (.1) Potri.001G190400 [exp] 532 / 0 AT4G29130 649 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.018G088300 [exp] 522 / 0 AT4G29130 743 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.001G254800 [exp] 454 / 6e-156 AT1G50460 620 / 0.0 hexokinase-like 1 (.1) Potri.009G050000 [exp] 440 / 1e-150 AT1G50460 576 / 0.0 hexokinase-like 1 (.1) Potri.007G009300 [exp] 391 / 1e-131 AT4G37840 520 / 0.0 hexokinase-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF03727 [flax] [poplar] Hexokinase_2 Hexokinase CL0108 [flax] [poplar] Actin_ATPase PF00349 [flax] [poplar] Hexokinase_1 Hexokinase
Representative CDS sequence Show only first row Show all	>Lus10024336 pacid=23175044 polypeptide=Lus10024336 locus=Lus10024336.g ID=Lus10024336.BGIv1.0 annot-version=v1.0 ATGTCGTTAATTCCCACCGCCGCCTCGCCGTCGGCCGGATTCTTCCGCCTCTCACCGCCACATGGCCCCTTAACCCAGGCAACCTGCATCAGAAGAGTGA CCTCACTCGGCGCGTTGCGATCCAACCCCGCCAGCATTTCAGTGGCCGGCTCAATCTTAAACAATCTACAGCAGGACTCTGCCACTCCTCTCCCCGTCCT CCGCCACGTGGCTGATGCCATGGCCCAAGAAATGAGAGCTGGCCTCGCCGTCGAAGGCGGCAGCCAGCTCAAGATGATCCTCAGCTACGTTGACTCCTTG CCCAGCGGGAATGAGAAAGGCTTGTTCTATGCGTTGGACCTTGGTGGGACGAATTTCAGGGTGTTGAGAGTTCAGTTGGGTGGGAAGGAAGACAGGGTGA TTGCTACTGAGTCGGAGCAAGTCTCCATTCCTCAAGAACTCATGTTTGGTACCTCTGAGCAACTGTTCGACTTCATTGCGAATGGGCTGGCGAGATTTGC GGAAAAAGAAGGTGGAGAGTTTAGGTTACCAAATGGGAGGCAGAGGGAGATCGGCTTCACATTCTCCTTCCCAGTGAAGCAGACCTCTATTGATTCTGGC TTACTTATCAAGTGGACTAAAGGATTTGCAGTTTCCGGAACGGCTGGAAGAGATGTTGTTGCCTGTCTGAATGAAGCAATGGAGAGGCAAGCATTGGACA TGAGGGTGTCTGCCCTGGTTAATGACACAGTTGGTACACTAGCCGGAGCTAGGTACTGGGATGATGATGTTATGGTTGCTGTCATATTGGGGACTGGAAC CAACGCTTGTTACGTAGAGAGAACAGATGCAATTCCAAGACTACATGGCACAATCTCATCTTCTGGAACAACTATTATCAATACCGAATGGGGAGCTTTC TCGAATGGTATACCGTTGACTGTGTTCGATAGAGACATGGATGATGCTAGTATCAACCCAGGAGAACAGATATTTGAGAAGACCATTTCGGGAATGTATC TAGGAGAAATCGCTCGTAGAGTGCTTCTGAAGATGGCAGAAGACGGGGATTTGTTTGGCAGAGCTGTCCCTGACAAACTATCCACCCCTTTCAGTCTCAG AACTCCAGATCTGTGTGCAATGCACCAGGACAATTCTGACGATCTTCAAACTGTTGGCGCTACACTCTACAACGTTGCTGGGGTGGAGTCCAACTTGAGC TCAAGGAGAGTGGCATTGAAGGTGTGCGATGCTATTGTAAAACGAGGAGGAAGGCTAGCAGGAGCAGGAATTGTGGGGATCCTGCAGAAGATGGAGGAGG ACTCAAAGGGTCTAATCTACGGGAAGCGGAGAGTAGTGGCCATGGATGGTGGCCTTTATGAGCATTACCCTCAGTACAGAGACTACTTGCAAGATGCTGT GGTAGAGCTCCTGGGTCCACAAGTTTCAAGCAACGTAGTGATCGAACATTCTAAAGATGGGTCTGGCATTGGAGCTGCTCTCTTGGCTGCTACCAACTCC AAGTATCAACATTGA
AA sequence Show only first row Show all	>Lus10024336 pacid=23175044 polypeptide=Lus10024336 locus=Lus10024336.g ID=Lus10024336.BGIv1.0 annot-version=v1.0 MSLIPTAASPSAGFFRLSPPHGPLTQATCIRRVTSLGALRSNPASISVAGSILNNLQQDSATPLPVLRHVADAMAQEMRAGLAVEGGSQLKMILSYVDSL PSGNEKGLFYALDLGGTNFRVLRVQLGGKEDRVIATESEQVSIPQELMFGTSEQLFDFIANGLARFAEKEGGEFRLPNGRQREIGFTFSFPVKQTSIDSG LLIKWTKGFAVSGTAGRDVVACLNEAMERQALDMRVSALVNDTVGTLAGARYWDDDVMVAVILGTGTNACYVERTDAIPRLHGTISSSGTTIINTEWGAF SNGIPLTVFDRDMDDASINPGEQIFEKTISGMYLGEIARRVLLKMAEDGDLFGRAVPDKLSTPFSLRTPDLCAMHQDNSDDLQTVGATLYNVAGVESNLS SRRVALKVCDAIVKRGGRLAGAGIVGILQKMEEDSKGLIYGKRRVVAMDGGLYEHYPQYRDYLQDAVVELLGPQVSSNVVIEHSKDGSGIGAALLAATNS KYQH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47840		HXK3	hexokinase 3 (.1)		Lus10024336 [exp]	0	1
AT1G13680			PLC-like phosphodiesterases su...		Lus10012600 [exp]	7.3	0.8960
AT3G52480			unknown protein		Lus10004203 [exp]	18.2	0.8917
AT5G14940			Major facilitator superfamily ...		Lus10032177 [exp]	22.0	0.8890
AT1G27500			Tetratricopeptide repeat (TPR)...		Lus10002376 [exp]	25.4	0.8767
AT1G24030			Protein kinase superfamily pro...		Lus10029187 [exp]	26.4	0.8776
AT1G24030			Protein kinase superfamily pro...		Lus10010703 [exp]	32.5	0.8825
AT1G25530			Transmembrane amino acid trans...		Lus10034283 [exp]	37.7	0.8796
AT1G25530			Transmembrane amino acid trans...		Lus10041482 [exp]	42.5	0.8734
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10017175 [exp]	51.4	0.8704
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10029145 [exp]	52.3	0.8684

Compare expression of checked genes

Lus10024336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.