Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47830 270 / 2e-93 SNARE-like superfamily protein (.1) AT4G35410 160 / 3e-50 Clathrin adaptor complex small chain family protein (.1.2) AT2G17380 160 / 4e-50 AP19 associated protein 19 (.1) AT2G19790 122 / 2e-35 SNARE-like superfamily protein (.1) AT3G50860 108 / 1e-29 Clathrin adaptor complex small chain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026316 [exp] 168 / 9e-53 AT2G17380 297 / 7e-105 associated protein 19 (.1) Lus10042352 [exp] 168 / 1e-52 AT2G17380 297 / 3e-104 associated protein 19 (.1) Lus10003641 [exp] 134 / 8e-40 AT4G35410 251 / 8e-87 Clathrin adaptor complex small chain family protein (.1.2) Lus10012924 [exp] 122 / 2e-35 AT2G19790 280 / 6e-99 SNARE-like superfamily protein (.1) Lus10035004 [exp] 116 / 7e-33 AT2G19790 262 / 6e-92 SNARE-like superfamily protein (.1) Lus10041742 [exp] 91 / 2e-22 AT3G50860 278 / 6e-97 Clathrin adaptor complex small chain family protein (.1) Lus10024011 [exp] 84 / 4e-20 AT3G50860 215 / 3e-72 Clathrin adaptor complex small chain family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G238701 [exp] 279 / 3e-97 AT1G47830 275 / 8e-97 SNARE-like superfamily protein (.1) Potri.002G022900 [exp] 278 / 7e-97 AT1G47830 278 / 6e-98 SNARE-like superfamily protein (.1) Potri.012G052000 [exp] 157 / 5e-49 AT2G17380 307 / 6e-109 associated protein 19 (.1) Potri.014G079000 [exp] 157 / 6e-49 AT4G35410 291 / 1e-102 Clathrin adaptor complex small chain family protein (.1.2) Potri.002G001800 [exp] 155 / 9e-48 AT2G17380 278 / 3e-97 associated protein 19 (.1) Potri.006G149100 [exp] 123 / 1e-35 AT2G19790 287 / 1e-101 SNARE-like superfamily protein (.1) Potri.007G025400 [exp] 100 / 1e-26 AT3G50860 296 / 1e-104 Clathrin adaptor complex small chain family protein (.1) Potri.005G122900 [exp] 100 / 3e-26 AT3G50860 286 / 1e-100 Clathrin adaptor complex small chain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0431 [flax] [poplar] PF PF01217 [flax] [poplar] Clat_adaptor_s Clathrin adaptor complex small chain
Representative CDS sequence Show only first row Show all	>Lus10024337 pacid=23174971 polypeptide=Lus10024337 locus=Lus10024337.g ID=Lus10024337.BGIv1.0 annot-version=v1.0 ATGAACAATAACCAAGAAGAACCCAGAACTCATCTACCAGTGGAACCCTGCAACGGAAAGTCAGCACAAGCATCACTACGTGGAACCCTCAAAAGTGGCT TGCAAGAAATATATGTGAAACTGCAGCTACCCATCATTCAATTTGGCATGAAAGAGTACTCTGAAATCACCACCGCAGGAAGAGTACTGCTCGCCGGCGA CGACCACCACAGCAGAACGAGTACGAGAATCTGCAGGAGAACGATCCGGTTTATTCTTCTGCAGAACAGGCAAGGAAAGACTCGTCTCGCCAAGTACTAT GTGCCTCTCGAGGATACCGAAAAACACAGAGTAGAGTACGAGGTTCATCGACTGGTTGTCAATCGAGATCCCAAGTTCACGAATTTCGTTGAGTTCAGAA CGCACAAGGTCATCTACCGAAGGTATGCTGGACTGTTTTTCTCCCTATGTGTGGACATAACAGATAACGAATTGGCTTACTTGGAGTGCATCCATTTGTT CGTGGAGATATTGGATCATTTCTTCAGCAATGTGTGTGAGCTAGACTTAGTGTTTAACTTCCACAAGGTTTATCTGATACTTGATGAGTTCATTCTTGCT GGAGAGCTCCAAGAAACAAGCAAAAGAGCGATTATAGAGAGAATGGGAGAACTGGAGAAGCTGGAGTAA
AA sequence Show only first row Show all	>Lus10024337 pacid=23174971 polypeptide=Lus10024337 locus=Lus10024337.g ID=Lus10024337.BGIv1.0 annot-version=v1.0 MNNNQEEPRTHLPVEPCNGKSAQASLRGTLKSGLQEIYVKLQLPIIQFGMKEYSEITTAGRVLLAGDDHHSRTSTRICRRTIRFILLQNRQGKTRLAKYY VPLEDTEKHRVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA GELQETSKRAIIERMGELEKLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47830			SNARE-like superfamily protein...		Lus10024337 [exp]	0	1
AT1G02160			Cox19 family protein (CHCH mot...		Lus10024637 [exp]	6.8	0.7898
AT5G28050			Cytidine/deoxycytidylate deami...		Lus10001791 [exp]	7.5	0.7933
AT2G34980		SETH1	phosphatidylinositolglycan syn...		Lus10009915 [exp]	12.0	0.7806
AT1G12390			Cornichon family protein (.1)		Lus10009295 [exp]	30.0	0.7680
AT3G04780			Protein of unknown function (D...		Lus10020246 [exp]	48.8	0.7663
AT5G58110			chaperone binding;ATPase activ...		Lus10028103 [exp]	66.1	0.7425
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10029155 [exp]	85.6	0.7477
AT2G17390		AKR2B	ankyrin repeat-containing 2B (...		Lus10013859 [exp]	87.7	0.6947
AT5G59300		ATUBC7, UBC7	ARABIDOPSIS THALIANA UBIQUITIN...		Lus10016573 [exp]	90.1	0.7368
AT1G04960			Protein of unknown function (D...		Lus10014626 [exp]	91.8	0.7469

Compare expression of checked genes

Lus10024337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.