Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024338 pacid=23175026 polypeptide=Lus10024338 locus=Lus10024338.g ID=Lus10024338.BGIv1.0 annot-version=v1.0 ATGGTTATCTCCAAGTTTATAGTATTTGCCTCTCTTCTCTTCGTCATCCAACTAGCTAATGCAGATCAGAATCAGCACCCGGCGGCCACACCGGTGGCAG TACCCGCCCCGAACTACCCGCCGCCGAAGATTGTTAGTATTTGGGTTTCCATTAATTCGATGATTGATCAGATTGTGGGAGCGCTTGCAAGGCCAGGTGC CAGCAATCCAGCAGGCCAAACCTTTGTCACAGAGCATGTGGTACCTGCTGTGTCCGGTGTAGTTGTGTTCCTCCCGACACTGCCGGTAACTACGACCAAT GTCCTTGCTATGCTGGCTTGA
AA sequence Show only first row Show all	>Lus10024338 pacid=23175026 polypeptide=Lus10024338 locus=Lus10024338.g ID=Lus10024338.BGIv1.0 annot-version=v1.0 MVISKFIVFASLLFVIQLANADQNQHPAATPVAVPAPNYPPPKIVSIWVSINSMIDQIVGALARPGASNPAGQTFVTEHVVPAVSGVVVFLPTLPVTTTN VLAMLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024338 [exp]	0	1
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10027195 [exp]	1.7	0.8764
AT1G10550		XTH33, XET	xyloglucan:xyloglucosyl transf...		Lus10013000 [exp]	2.0	0.8438
AT4G01575			serine protease inhibitor, Kaz...		Lus10007864 [exp]	3.9	0.8189
AT1G01540			Protein kinase superfamily pro...		Lus10007919 [exp]	6.6	0.8294
AT1G27200			Domain of unknown function (DU...		Lus10036676 [exp]	6.9	0.8031
AT5G40150			Peroxidase superfamily protein...		Lus10039471 [exp]	7.3	0.8359
AT1G75800			Pathogenesis-related thaumatin...		Lus10033136 [exp]	9.5	0.7885
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Lus10031685 [exp]	12.1	0.7965
AT4G35320			unknown protein		Lus10022985 [exp]	12.6	0.7945
AT1G05710	bHLH	bHLH153	basic helix-loop-helix (bHLH) ...		Lus10027064 [exp]	14.1	0.7883

Compare expression of checked genes

Lus10024338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.