Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37920 236 / 3e-75 EMB1513 embryo defective 1513, copper ion transmembrane transporters (.1) AT2G07750 100 / 3e-22 DEA(D/H)-box RNA helicase family protein (.1) AT1G63250 94 / 3e-20 DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002043 [exp] 579 / 0 AT2G37920 259 / 4e-84 embryo defective 1513, copper ion transmembrane transporters (.1) Lus10019121 [exp] 86 / 1e-19 AT1G63250 166 / 1e-48 DEA(D/H)-box RNA helicase family protein (.1) Lus10034440 [exp] 86 / 2e-19 AT1G63250 161 / 1e-46 DEA(D/H)-box RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G103600 [exp] 249 / 6e-79 AT2G37920 250 / 4e-82 embryo defective 1513, copper ion transmembrane transporters (.1) Potri.006G092100 [exp] 239 / 3e-75 AT2G37920 243 / 1e-79 embryo defective 1513, copper ion transmembrane transporters (.1) Potri.001G107300 [exp] 88 / 3e-18 AT1G63250 841 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.003G124100 [exp] 81 / 6e-16 AT1G63250 883 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024339 pacid=23175024 polypeptide=Lus10024339 locus=Lus10024339.g ID=Lus10024339.BGIv1.0 annot-version=v1.0 ATGAACCATTTCCTCCACAAATCATCTGCTGCAGCTCCGTCACCGGGGGGAAATTGGATAATCACCGATGGGATGGCGCTATCAATGCCAGCACATCTCT CCTTCTCCAAACCCCCTATACCAGAATACTGCCTCTTCCTCTCCAAATTCTCCCACCTCTCAATCCATCCAAAACCAATCCCTAGGAAACTCACCGTAAT CAGAATGGGCGGCGGCCCACGCACCTACCCAGGCGGGGTATCGCGGTGGCAGTGGAAGCGCATGCAGTCAAAGAAAGCCAAGCAGCTCCTCAAGGCCCGG CTTAGCCGGGAGAGGCAAATCTACGAAATGCGAAAGCGAGCCGAGCTCAAAGCCGCCGTCGCCGACCTAGAACGGCCGGGGGGGGAGGGTCATCAAGACC CCACTCCCGTTGCTCCCGTGTTCTCGGTGAGCGCCGATGAGCAGGTGAAGGTCCTGGCGGATAGGTTTCAGAAACCCGGCGGATTTGATCTGTGGACGGA TAGAGACGGCCCGCAATTGTTCAAGACTCATGACGGCATCCCTTCCGCTAGGTTTTTCCCTAAGGGAGTTGTTCATAGCGTAAAACCGTACGGGAAGATT TCCGGACTGGATGATGATGATGATTCAGAAGATGGGGAATCAAGCGGAGTTGAGAGATGGAGGGATCGAAGAGGCCAGTCTGAGATGAATGTAGTGGAGA AACATGGGAGGAGAAGGAGGTTTAGGGATTTGAATTTTCCGGAAGAGGAATCAGGTTCAGAAGCTGGGAATTTGAATGATTATTCTAGTGCAAATTCAGG GGTCAATAGAAATGGATTGGGGAGAAGGGGATCGGAGAATTTGAAGTATTCTAGTGCAAATTCAGGGTTCAATAGAAATGTCTTGGGGAAATCGGAGAGA TTGAAGCATTCTGGTGGAAACTCAACCGTGGATAGAAATGGTGGTGAAATGAGGAGGAACAGAGGGAATGGGAGATTTGGGAATTCTGGGGAGGGATTGG GATCGGGTCAAGTTGTTTATCAGAGAAAGTTGACTGGAAGAACATCGTCCAACTCTAACAAGAGTAGTAGTGGTAGGATCCAGAACAACAGTAATAGTAT GATTCAGAACAATGGTGATGTTGGGGGACAAGTTTCAGTGAATTCCAGGAATTTAGAGTCTAGGAATTATGATGCCAACCACAAAAGAAAGAATTTGTCA AGCAGAAGGGATCACAGGGCTAGTTGGACCCGGAACGAAAAGAATAGAAGTCAGGGATACGTGAAGTCCAGGAGTTCTTCTGAGTCTGAAGAAGTTTATG ATATGAGATTGCAACAGGATGGGAGTTATGGATTCCCAGGTCGTCAGCCTTGA
AA sequence Show only first row Show all	>Lus10024339 pacid=23175024 polypeptide=Lus10024339 locus=Lus10024339.g ID=Lus10024339.BGIv1.0 annot-version=v1.0 MNHFLHKSSAAAPSPGGNWIITDGMALSMPAHLSFSKPPIPEYCLFLSKFSHLSIHPKPIPRKLTVIRMGGGPRTYPGGVSRWQWKRMQSKKAKQLLKAR LSRERQIYEMRKRAELKAAVADLERPGGEGHQDPTPVAPVFSVSADEQVKVLADRFQKPGGFDLWTDRDGPQLFKTHDGIPSARFFPKGVVHSVKPYGKI SGLDDDDDSEDGESSGVERWRDRRGQSEMNVVEKHGRRRRFRDLNFPEEESGSEAGNLNDYSSANSGVNRNGLGRRGSENLKYSSANSGFNRNVLGKSER LKHSGGNSTVDRNGGEMRRNRGNGRFGNSGEGLGSGQVVYQRKLTGRTSSNSNKSSSGRIQNNSNSMIQNNGDVGGQVSVNSRNLESRNYDANHKRKNLS SRRDHRASWTRNEKNRSQGYVKSRSSSESEEVYDMRLQQDGSYGFPGRQP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37920		EMB1513	embryo defective 1513, copper ...		Lus10024339 [exp]	0	1
AT2G37920		EMB1513	embryo defective 1513, copper ...		Lus10002043 [exp]	1.4	0.9353
AT4G10300			RmlC-like cupins superfamily p...		Lus10035659 [exp]	2.4	0.9248
AT4G03600			unknown protein		Lus10039834 [exp]	5.3	0.8928
AT4G13540			unknown protein		Lus10023697 [exp]	7.1	0.8561
AT5G20935			unknown protein		Lus10013382 [exp]	7.5	0.9074
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10016803 [exp]	7.5	0.8884
AT3G05170			Phosphoglycerate mutase family...		Lus10024659 [exp]	8.9	0.8992
AT4G14500			Polyketide cyclase/dehydrase a...		Lus10021883 [exp]	9.3	0.8613
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10042345 [exp]	9.9	0.9175
AT4G25910		ATCNFU3, NFU3	NFU domain protein 3 (.1)		Lus10001634 [exp]	10.4	0.9141

Compare expression of checked genes

Lus10024339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.