Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37900 747 / 0 Major facilitator superfamily protein (.1) AT3G53960 731 / 0 Major facilitator superfamily protein (.1) AT3G54450 433 / 4e-146 Major facilitator superfamily protein (.1) AT5G01180 434 / 5e-146 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT3G54140 426 / 8e-143 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G62200 416 / 5e-139 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02040 415 / 2e-138 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT2G40460 409 / 2e-136 Major facilitator superfamily protein (.1) AT5G46040 394 / 3e-130 Major facilitator superfamily protein (.1) AT5G46050 390 / 1e-128 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012663 [exp] 947 / 0 AT2G37900 696 / 0.0 Major facilitator superfamily protein (.1) Lus10011055 [exp] 447 / 6e-151 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10000670 [exp] 439 / 7e-148 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 439 / 8e-148 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10003614 [exp] 437 / 4e-147 AT5G46050 726 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10040099 [exp] 436 / 9e-147 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10023743 [exp] 428 / 2e-143 AT5G46050 827 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10011786 [exp] 427 / 4e-143 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022891 [exp] 422 / 3e-141 AT5G46050 714 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G092000 [exp] 839 / 0 AT2G37900 777 / 0.0 Major facilitator superfamily protein (.1) Potri.016G103500 [exp] 833 / 0 AT2G37900 776 / 0.0 Major facilitator superfamily protein (.1) Potri.008G061100 [exp] 732 / 0 AT3G53960 697 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 449 / 5e-152 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.001G027100 [exp] 434 / 6e-146 AT3G54450 695 / 0.0 Major facilitator superfamily protein (.1) Potri.011G120000 [exp] 433 / 1e-145 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.001G248600 [exp] 429 / 4e-144 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G068100 [exp] 426 / 1e-142 AT5G46050 829 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.T124706 [exp] 425 / 1e-142 AT3G54450 662 / 0.0 Major facilitator superfamily protein (.1) Potri.003G197333 [exp] 424 / 2e-142 AT3G54450 663 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10024340 pacid=23174909 polypeptide=Lus10024340 locus=Lus10024340.g ID=Lus10024340.BGIv1.0 annot-version=v1.0 ATGGAGGTTGAAAGGGTTGATGATCATAAAGATGAGAAATGGGTTCATGACTCTTCTGTGGATCATAAAGGCAGGATTCCTCTTCGACGTGCCACCGGTG CTTGGAAAGCTTCCCTTTTCATCATCGTGATTGAGTTCAGCGAGAGGCTTAGTTATTTCGGGATAGCGACCAGCTTGATCATTTACCTCACTAGGGTCAT TCAACAAGACATCAAAACCGCCGCCCGGAGCGTCAATTACTGGTCCGGCGTCACCACCTTGATGCCCCTCCTCGGCGGCTTCATCGCCGATTCCTACTTG GGCCGATACCCCACTGTTTTCTTCTCCTCCATCATCTACCTCCTCGGACTAATTCTCCTGACGATGTCGTGGTTCGTCCCAAGTTTGAGGCCATGCGGCG GCGGAGGCGGCGGAGGCACAGTGTGCCACCAGCCCAGCAAGGTACACGAAGTAACATTCTTCATCGCCATCTACCTGATCTCCCTTGGCACCGGAGGCCA CAAGCCGGCGCTGGAGAGCTTCGGAGCCGATCAATTCGACGACGACCACCAGGGGGAGCGGCGGAAGAAGATGTCGTATTTCAATTGGTGGAACTTCGGG CTGTGTTGTGGACTGCTACTTGGTGTCACGGTGATCGTGTACATTCAGGACCACGTGAGTTGGGGTGCGGCAGATGTTATCCTGGCGGTCGTTATGGGCA TCTCCCTTGCTATCTTCATCGTCGGCCGTCCGTTCTATCGCTACCGCGTCCCCACCGGAAGCCCGCTAACGCCGATGTTGCAGGTGATGGTCGCCGCCAT CAGGAAAAGGAAATTGACACGTCCTTCGGATCCTGCTGATCTACACGAAGCACCCAAGTCGAAAATGTCCCAAACGAGGCCGCTCTGCCACACCGATAGA CTCAGGTTTCTAGACAAGGCAGCAATAATGGAAGACAGAAGAACCCCAACCGCAGCTGCCACCGAGAAACAAAGTCCATGGAGACTATCAACCGTGACAA GAGTCGAGGAATTAAAGCTCCTCTGCAACATCTTCCCAATCTGGGTAGCCACAATAACCTTTGGCCTAGCCGTAGCACAAGGATCCACATTCTTCATCAA ACAATGCACAATGCTCGACCGTAAAGTAGGTAATGGATTCCTAATCCCACCAGCCTCAATTTTTGCCCTGGCAGCAGTCGGGATGATATTCACCGTCACT ATCTACGAAAAACTCCTCGTGCCACTCCTCAGAAGAGCCACAGGCAACGAACGAGGAATCAAGATCCTCCAACGAATCGGGATCGGGATGATCTTCTCAG TCGCCACCATGACCGTGGCGGCCCTAGTGGAGAGGAAGAGGCTCTCGGTCGTCGACCGAGAGAATTCCTCAATCTCGATGAGCGCGTTCTGGCTGGCTCC GCAGTTCTTGTTACTAGGTATTGGAGATGGTTTCACCCTGGTGGGTCTTCAAGAGTATTTTTACGAGCAGGTTCCAGACTCAATGAGGAGCTTGGGGATA GCGTTCTACTTGAGCGTGATCGGGGCGGGAAGCTTTGTTAGCAGCATGTTGATAACGGTCGTGGACCGGGTGACAGAGAGGAGTAGTAACGGAGGCGGGA AGAGCTGGTTCGGGAAGGATTTGAATAGTAGTCGGTTGGATAATTTCTATTGGCTGCTGGCGGGACTATCTGCGGCTAATTTGGTGGTGTATGTGGTGCT GGCTAGGCGGTATGAGTACAAAGATGTGCAGAGGAGTGCTGTGGTTGCGGCGGATGATCACCATGATTGGGCTTGA
AA sequence Show only first row Show all	>Lus10024340 pacid=23174909 polypeptide=Lus10024340 locus=Lus10024340.g ID=Lus10024340.BGIv1.0 annot-version=v1.0 MEVERVDDHKDEKWVHDSSVDHKGRIPLRRATGAWKASLFIIVIEFSERLSYFGIATSLIIYLTRVIQQDIKTAARSVNYWSGVTTLMPLLGGFIADSYL GRYPTVFFSSIIYLLGLILLTMSWFVPSLRPCGGGGGGGTVCHQPSKVHEVTFFIAIYLISLGTGGHKPALESFGADQFDDDHQGERRKKMSYFNWWNFG LCCGLLLGVTVIVYIQDHVSWGAADVILAVVMGISLAIFIVGRPFYRYRVPTGSPLTPMLQVMVAAIRKRKLTRPSDPADLHEAPKSKMSQTRPLCHTDR LRFLDKAAIMEDRRTPTAAATEKQSPWRLSTVTRVEELKLLCNIFPIWVATITFGLAVAQGSTFFIKQCTMLDRKVGNGFLIPPASIFALAAVGMIFTVT IYEKLLVPLLRRATGNERGIKILQRIGIGMIFSVATMTVAALVERKRLSVVDRENSSISMSAFWLAPQFLLLGIGDGFTLVGLQEYFYEQVPDSMRSLGI AFYLSVIGAGSFVSSMLITVVDRVTERSSNGGGKSWFGKDLNSSRLDNFYWLLAGLSAANLVVYVVLARRYEYKDVQRSAVVAADDHHDWA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37900			Major facilitator superfamily ...		Lus10024340 [exp]	0	1
AT1G62710		BETAVPE, BETA-V...	beta vacuolar processing enzym...		Lus10032236 [exp]	1.0	0.9687
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Lus10041653 [exp]	1.4	0.9644
AT1G47410			unknown protein		Lus10009767 [exp]	2.4	0.9620
AT5G26330			Cupredoxin superfamily protein...		Lus10041211 [exp]	5.5	0.9588
AT4G23496		SP1L5	SPIRAL1-like5 (.1)		Lus10024667 [exp]	6.2	0.9369
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10016872 [exp]	8.0	0.9615
AT1G17620			Late embryogenesis abundant (L...		Lus10037638 [exp]	9.9	0.9503
AT1G17620			Late embryogenesis abundant (L...		Lus10015622 [exp]	10.4	0.9569
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10032728 [exp]	12.3	0.9465
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10025766 [exp]	15.9	0.9012

Compare expression of checked genes

Lus10024340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.