Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53950 806 / 0 glyoxal oxidase-related protein (.1) AT1G75620 440 / 1e-149 glyoxal oxidase-related protein (.1) AT1G19900 432 / 2e-146 glyoxal oxidase-related protein (.1) AT3G57620 416 / 3e-140 glyoxal oxidase-related protein (.1) AT1G14430 403 / 6e-135 glyoxal oxidase-related protein (.1) AT1G67290 380 / 3e-125 GLOX1 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) AT5G19580 375 / 2e-123 glyoxal oxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030798 [exp] 426 / 1e-143 AT1G14430 623 / 0.0 glyoxal oxidase-related protein (.1) Lus10015949 [exp] 422 / 2e-142 AT3G57620 654 / 0.0 glyoxal oxidase-related protein (.1) Lus10024312 [exp] 405 / 2e-136 AT1G75620 656 / 0.0 glyoxal oxidase-related protein (.1) Lus10011111 [exp] 364 / 2e-119 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Lus10043231 [exp] 365 / 3e-118 AT5G19580 647 / 0.0 glyoxal oxidase-related protein (.1) Lus10012979 [exp] 355 / 1e-113 AT5G19580 619 / 0.0 glyoxal oxidase-related protein (.1) Lus10011110 [exp] 346 / 7e-112 AT5G19580 597 / 0.0 glyoxal oxidase-related protein (.1) Lus10034959 [exp] 346 / 8e-112 AT1G67290 619 / 0.0 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) Lus10011109 [exp] 343 / 1e-111 AT5G19580 622 / 0.0 glyoxal oxidase-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G103400 [exp] 868 / 0 AT3G53950 801 / 0.0 glyoxal oxidase-related protein (.1) Potri.002G027000 [exp] 431 / 6e-146 AT1G75620 708 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235500 [exp] 428 / 6e-145 AT1G19900 699 / 0.0 glyoxal oxidase-related protein (.1) Potri.013G034900 [exp] 417 / 8e-141 AT3G57620 670 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G047701 [exp] 416 / 4e-140 AT3G57620 677 / 0.0 glyoxal oxidase-related protein (.1) Potri.010G034200 [exp] 415 / 2e-139 AT1G14430 653 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235600 [exp] 410 / 9e-138 AT1G19900 692 / 0.0 glyoxal oxidase-related protein (.1) Potri.001G083600 [exp] 395 / 6e-132 AT1G14430 520 / 2e-180 glyoxal oxidase-related protein (.1) Potri.006G160800 [exp] 385 / 2e-127 AT5G19580 668 / 0.0 glyoxal oxidase-related protein (.1) Potri.018G084200 [exp] 370 / 1e-121 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF09118 [flax] [poplar] DUF1929 Domain of unknown function (DUF1929) CL0159 [flax] [poplar] PF07250 [flax] [poplar] Glyoxal_oxid_N Glyoxal oxidase N-terminus
Representative CDS sequence Show only first row Show all	>Lus10024342 pacid=23174926 polypeptide=Lus10024342 locus=Lus10024342.g ID=Lus10024342.BGIv1.0 annot-version=v1.0 ATGGATCCTCTGTTCCTCCCCCTGCCTCAATTCCTCCTCCTCCTCCTCTTCTCCTCATTTCCCTCAATTCAATCACAGCTCCCGGGCACATGGGACTTAC TCGTCGCCGACGCCGGCGTCGCCTCAATGCACACCGCCGTCACCCGATTCAACACCGTCGTCCTCCTCGACCGCACTAACATCGGCCCTTCCCGAAAGCT CCTCCCCAAACCCCGCTGCCGAATGGACCCGCACGATGCCGTTCTCAAGCACGACTGCTACGCCCACTCCCTCGTCTTCCACCCCGACACCAACCACCTC CGCCCCCTCATGATCCTCACCGACACCTGGTGCTCCTCCGGCCAATTCCTCCCCGACGGCACCCTCCTCCACACCGGCGGCGACCTCGACGGCTTCAGAA AGATCCGCAAGTTCCAGCCTTGCGATTGGGACGGCCTCTGCGATTGGGTCGAGCTCGATGACGTCGAATTAGCTCAGGGAAGGTGGTACGCCACTAATCA GATCTTACCCGACGGATCGGTCATCATCGTCGGCGGCAGAGGCGCTAACACAGTCGAGTTTTATCCGGCGAGGTTAAACGGCGCCGTCTCGTTCCCTTTC TTAGTCGAAACCGAGGACAGCCAGATGGACAATTTGTACCCTTACGTCCACCTCCTCCCTAACGGCCGTCTATTCATCTTCGCCAACAACAGAGCAGTTT TATACGACCACGATTCCAACTCCGTCATCAAGAATTACCCGCCGTTAGATGGGGGCCCGCGGAATTACCCTTCGGCGGGATCTTCGGCCATGCTGGCACT TGAAGGGGATTATTCAACGGCCGTGATAGTCGTCTGCGGTGGGGCCCAGTACGGTGCGTTCATCGAGAAGAGTACCGACACTCCGGCGCATGGAAGCTGC GGGAGGATCGTCGCCACGTCAGCTGAGCCATCTTGGCAGATGGAGGACATGCCGTTTGGGAGGATCATGGGGGATATGGTTATGCTCCCATCCGGCGACG TTTTGATCATCAACGGAGCTCAGGCGGGTACCCAGGGTTTCGAATTGGCTTCCAACCCGTGTTTGTACCCGGTTCTTTACCGACCCGATCAGCCGGTCGG GTTACGGTTTATGACTCTGACTCCCGGAACCGTCCCTAGATTGTATCACTCCACGGCAAACCTCTTGCCGGACGGGAGGATTCTGCTCGCAGGAAGCAAC CCGCATTATTTCTACAAATTCGAGGCGGAATTCCCGACGGAGATGCGAATCGAAGCCTTTTCGCCAGAGTATTTGGCTCCGGACAGGGCGAATTTGAGGC CGGTGATCGAGGAAATGCCCGAGACGGTTCGTTACGGAGAGGCTTTCCAAGTTTCGGTGTCGGTTGAATTGCCGGTGGTGGGAATCGTAGAGGTGAACAT GGCGAGTGCTCCGTTTGCGACTCACTCGTTCTCGCAGGGGCAGAGACTGGTGAAATTGGCGGTGACGCCTAGCGTCCCCGACGTCGGCGCGGGAAGGTAC AAGATCAGTTGTACGGCGCCGCCAAGCGGCGCGGTGGCTCCGCCTGGTTACTATATGGTGTTTGCGGTTAACCAGGGTGTGCCGAGTATAGCCCGTTGGG TGCGAATGATTTCTTTTTAG
AA sequence Show only first row Show all	>Lus10024342 pacid=23174926 polypeptide=Lus10024342 locus=Lus10024342.g ID=Lus10024342.BGIv1.0 annot-version=v1.0 MDPLFLPLPQFLLLLLFSSFPSIQSQLPGTWDLLVADAGVASMHTAVTRFNTVVLLDRTNIGPSRKLLPKPRCRMDPHDAVLKHDCYAHSLVFHPDTNHL RPLMILTDTWCSSGQFLPDGTLLHTGGDLDGFRKIRKFQPCDWDGLCDWVELDDVELAQGRWYATNQILPDGSVIIVGGRGANTVEFYPARLNGAVSFPF LVETEDSQMDNLYPYVHLLPNGRLFIFANNRAVLYDHDSNSVIKNYPPLDGGPRNYPSAGSSAMLALEGDYSTAVIVVCGGAQYGAFIEKSTDTPAHGSC GRIVATSAEPSWQMEDMPFGRIMGDMVMLPSGDVLIINGAQAGTQGFELASNPCLYPVLYRPDQPVGLRFMTLTPGTVPRLYHSTANLLPDGRILLAGSN PHYFYKFEAEFPTEMRIEAFSPEYLAPDRANLRPVIEEMPETVRYGEAFQVSVSVELPVVGIVEVNMASAPFATHSFSQGQRLVKLAVTPSVPDVGAGRY KISCTAPPSGAVAPPGYYMVFAVNQGVPSIARWVRMISF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53950			glyoxal oxidase-related protei...		Lus10024342 [exp]	0	1
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10037430 [exp]	1.0	0.9099
AT4G35320			unknown protein		Lus10026561 [exp]	2.8	0.9056
AT5G44670			Domain of unknown function (DU...		Lus10008076 [exp]	6.3	0.8478
AT4G33640			unknown protein		Lus10020463 [exp]	7.1	0.8364
AT5G64020		TBL14	TRICHOME BIREFRINGENCE-LIKE 14...		Lus10037877 [exp]	10.4	0.8394
AT1G12500			Nucleotide-sugar transporter f...		Lus10007029 [exp]	10.6	0.8498
AT5G63180			Pectin lyase-like superfamily ...		Lus10013668 [exp]	14.4	0.8230
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10002221 [exp]	14.4	0.8104
AT1G32860			Glycosyl hydrolase superfamily...		Lus10017344 [exp]	14.5	0.8280
AT3G23820		GAE6	UDP-D-glucuronate 4-epimerase ...		Lus10022552 [exp]	16.0	0.8511

Compare expression of checked genes

Lus10024342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.