Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34300 325 / 6e-97 lectin protein kinase family protein (.1) AT5G35370 245 / 4e-68 S-locus lectin protein kinase family protein (.1) AT5G24080 231 / 2e-66 Protein kinase superfamily protein (.1) AT2G19130 236 / 2e-65 S-locus lectin protein kinase family protein (.1) AT4G32300 228 / 2e-62 SD2-5 S-domain-2 5 (.1) AT4G00340 225 / 2e-61 RLK4 receptor-like protein kinase 4 (.1) AT1G23540 201 / 6e-54 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT5G20050 191 / 2e-52 Protein kinase superfamily protein (.1) AT3G26940 190 / 3e-52 CDG1 CONSTITUTIVE DIFFERENTIAL GROWTH 1, Protein kinase superfamily protein (.1) AT5G38560 195 / 4e-52 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024348 [exp] 1308 / 0 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10032944 [exp] 1231 / 0 AT2G19130 371 / 1e-115 S-locus lectin protein kinase family protein (.1) Lus10004283 [exp] 516 / 2e-169 AT2G19130 339 / 6e-104 S-locus lectin protein kinase family protein (.1) Lus10013252 [exp] 334 / 1e-100 AT1G34300 378 / 7e-119 lectin protein kinase family protein (.1) Lus10006052 [exp] 331 / 7e-99 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10029802 [exp] 312 / 3e-92 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039732 [exp] 300 / 3e-88 AT2G19130 647 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10004365 [exp] 297 / 1e-86 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10039315 [exp] 281 / 2e-80 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G102500 [exp] 966 / 0 AT1G34300 360 / 1e-111 lectin protein kinase family protein (.1) Potri.016G102700 [exp] 959 / 0 AT1G34300 356 / 5e-110 lectin protein kinase family protein (.1) Potri.016G102600 [exp] 958 / 0 AT1G34300 367 / 1e-114 lectin protein kinase family protein (.1) Potri.016G102900 [exp] 954 / 0 AT1G34300 359 / 2e-111 lectin protein kinase family protein (.1) Potri.006G091400 [exp] 944 / 0 AT1G34300 372 / 3e-116 lectin protein kinase family protein (.1) Potri.013G095800 [exp] 593 / 0 AT2G19130 350 / 2e-108 S-locus lectin protein kinase family protein (.1) Potri.013G086100 [exp] 592 / 0 AT4G00340 300 / 1e-89 receptor-like protein kinase 4 (.1) Potri.013G096400 [exp] 589 / 0 AT2G19130 347 / 2e-107 S-locus lectin protein kinase family protein (.1) Potri.013G096000 [exp] 511 / 4e-169 AT2G19130 300 / 1e-90 S-locus lectin protein kinase family protein (.1) Potri.010G103300 [exp] 343 / 8e-104 AT1G34300 375 / 1e-117 lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10024343 pacid=23175004 polypeptide=Lus10024343 locus=Lus10024343.g ID=Lus10024343.BGIv1.0 annot-version=v1.0 ATGGAGAAGCTCCAAATTTGTAAAGCTCCACCCTTTTTCATCATCCTCATATTTTCCATCGTCATTCTATTCCCTCTACAGATTTCCTCACATCCCATAA ACAACGAAAAATTCCAGCTCCAGAGAGGATCATCCCTATCAGTAGAATCACAAGCAACATACTTGCTCATTTCCCCAGACAAAACCTTCACTTGCGGATT CTACTCCTTAGGCCAAAATCAAAACGCCTACTGGTTCTCCATCTGGTTCACAAACTCCACCGACCGAACCGTGGTCTGGACGGCCAACCGAAACAGACCG GTCAATTCCAAAGGCTCCAAACTTTTCTTCCGTCCAAACAACGTCTTGGCCTTAACCGACGTTGACGGTTTCCTCGTTTGGGAGACCAACACAAGCTCCA CCGACGCTTCCTTCGCCGAGCTTCTCAACTCCGGCAACCTCGTCCTAAAAAATCCACAAGGTAAAATCCTATGGCAGAGCTTCGATTCCCCAACCGACAC TCTCTTACCAACCCAACTCTTCAGAAAGCGTTCTACTTTGGTCTCGAATTTGGGTCGGGGCAATTACGGGTCGGGTTATTTCAGCTTCTTTTTCGACAAT GATAATGTATTGAGGATGATCTATGATGGCCCTGACGTTTCAAGCATCTACTGGCCAACTCCCGGTATCAAAGTGATTGAGACTGGACGTACAACTTATA ACAGTAGTAGGATTGCTTTGCTTGATGAGATGGGGAGTTTTGTCTCTAGTGACAGGTTACAGTTTAGTGCTTCTGATTTTGGCACTCACGGCGTTAAACG AAGGTTGACGATGGATTCCGACGGAAACTTGAGGCTTTATAGCTTGATTAGTTTGACAGGGTCGTGGGTAATTACGTGGCAGGCTATTGATAATCTGTGT AGTGTTCATGGGATTTGTGGGAGAAATGGGATTTGTTTGTACACTCCGGTTCCTAAATGTTCATGTGCTCCTGGGTATGAAGTCAACGATCCTAAAGATT GGAGTAAAGGGTGTAAACCGGTTGTTAAAAGATCATGTCTTGGAAGGAATCAGGTGAAATTTGTTAAAGTTCCACATGTAGATTTCTGGGGGTTTGACCT CAATTACAATCAACAAGTTTCGATGGAGACTTGCAGGGATCTTTGCTTGGACGATTGTCAGTGTGATGCTTATAGCTATAGGCTGACCGGGAAAGCGTTG TGTTATACGAAAAGTATACTGTTTAATGGCTACCAGTCTACAGCCTTTCCGGGCGACATATACTTGAAGCTGCCGCGGAGTGTTGCTGCTGTGGAAGAAG CTTCAACAGCATCTATGCCTCTAGTTCTCAATGACAGCGACATTGTTTGTGAAAATGGAGGATCAAGGATCGAGATTGGTTCTCCGTCTATGTACGAGAT AGAAACAAAGAAAGTGAGGTGGGTTTATCTCTACTCGTTCGCTGGCGCGATTGGTGTGATTGCGATCCTGTTGATGGGTATAGGTTGGTGGTTTCTTAAT GCAATGCTGAGGATGCCAGATTCAGTGGAGATGGGGTATCATACGATAGCGAGTCAGTTTCGGAGGTTTAGCTATGGAGAGCTGAAGAAAGCAACCAAGA ATTTTAAAGAAGAGCTTGGAAGGGGAGGGTCAGGGGTTGTGTATAGAGGTGTTTTGGTTGACGAAAGGGTTGTGGCTGTGAAGAGACTCAAAGATTCGTA TCAAGGTGAAGATGTGTTCTGGGCAGAAGTTACCACCATCGGGAAGATCAACCACATGAATCTGGTGAGAATGTGGGGGTACTCAGCAGAAAACCGGCAT AGAATGTTGGTTTATGAGTATCTGAAGCACCAATCGCTAGATAATTATCTTTTTTCGAGTAGTGGGACCAACTTTCTCGAGTGGGAAGTGAGGTTCAAGG TTGCAATGGGGACGGCGAAAGGATTGGCTTATCTTCACCACGAGTGCCTCGAATGGGTCATACATTGCGATGTGAAGCCTGAGAACATACTCTTGGATGA CGACTTCGAGCCAAAGATTGCTGATTTCGGGCTCGCAAAGTTGTCACGGAGGGACAACAACAACTCTCGGTTCACCAAGATCAGAGGGACAAAAGGGTAC ATGGCCCCAGAGTGGGCTTCAAATCTCCCCATTACAGCGAAGGTCGATGTGTACAGCTATGGAGTTGTGATTCTTGAACTGGTGAAAGGAATCAGGCTCT CCCACATGGTTGAGGAGGAGGAGGAAGCTGAGTTGGCTAGGTTTATCAAAATATCCAAAAGGAAAATCATGTTCGCAGGAGGAGAGTCGTGGGTTGATGA TCAGGAGATAGTGGATCCGAAGTTAGAAGGGAAGTTTAGTCACAAACAAGCGGCGAAAATGATCGAAATCGGGTTGGCTTGTGTTGATGAAGATAGAAAC AAGAGGCCAACAATGGACATTGTTGTCCAATCTCTAATAGATTCTCAGGATTACAGGCCAAGCTCATCAACTATTCAGGGGATGCACACTGATATTACAG CATTAAGCAGTAGGCCGAGCATTTCACGAGAAGCTTTGCGTATATTTAACGAGGAAGGGTTTAGAGCATTTTGGAGAGGAAATCTAGTCACAATTGCTCA CCGTGTTCCTTATTCCGCAGTCAACTTCTATGCCTATGAACAATTTAAGAGTGGAAGTCATCTGAAAGGTTTTTTGCCATTACAGCATTTGCAATCCTTT TTCGGCCTGGAGAGACATGGAGGGAACTCGACAGCCAATGTAGCTGTACGTTTCGTCGGTGGAGGTTTGGCCGGGGGTAACCGCTGCCTCTGCTACGTAT CCATTGGATCTTGTTCGGACTCGTCTCTCAGCCCAGGGTGTGGGACAAAACTTAGCCATATAGGATTTTGTGTATACGAGTCTCTCAAATCATTCTGGGA AGCTGAAAGGCCGAAGGATTCCACTAGAATGGTTAGCCTTGGTTCACAAGACATGATGATGGCCCATTCAACACTCACCTCCAATGATATGCAACTAGTA ACTAATCAGCAGATTTCATGA
AA sequence Show only first row Show all	>Lus10024343 pacid=23175004 polypeptide=Lus10024343 locus=Lus10024343.g ID=Lus10024343.BGIv1.0 annot-version=v1.0 MEKLQICKAPPFFIILIFSIVILFPLQISSHPINNEKFQLQRGSSLSVESQATYLLISPDKTFTCGFYSLGQNQNAYWFSIWFTNSTDRTVVWTANRNRP VNSKGSKLFFRPNNVLALTDVDGFLVWETNTSSTDASFAELLNSGNLVLKNPQGKILWQSFDSPTDTLLPTQLFRKRSTLVSNLGRGNYGSGYFSFFFDN DNVLRMIYDGPDVSSIYWPTPGIKVIETGRTTYNSSRIALLDEMGSFVSSDRLQFSASDFGTHGVKRRLTMDSDGNLRLYSLISLTGSWVITWQAIDNLC SVHGICGRNGICLYTPVPKCSCAPGYEVNDPKDWSKGCKPVVKRSCLGRNQVKFVKVPHVDFWGFDLNYNQQVSMETCRDLCLDDCQCDAYSYRLTGKAL CYTKSILFNGYQSTAFPGDIYLKLPRSVAAVEEASTASMPLVLNDSDIVCENGGSRIEIGSPSMYEIETKKVRWVYLYSFAGAIGVIAILLMGIGWWFLN AMLRMPDSVEMGYHTIASQFRRFSYGELKKATKNFKEELGRGGSGVVYRGVLVDERVVAVKRLKDSYQGEDVFWAEVTTIGKINHMNLVRMWGYSAENRH RMLVYEYLKHQSLDNYLFSSSGTNFLEWEVRFKVAMGTAKGLAYLHHECLEWVIHCDVKPENILLDDDFEPKIADFGLAKLSRRDNNNSRFTKIRGTKGY MAPEWASNLPITAKVDVYSYGVVILELVKGIRLSHMVEEEEEAELARFIKISKRKIMFAGGESWVDDQEIVDPKLEGKFSHKQAAKMIEIGLACVDEDRN KRPTMDIVVQSLIDSQDYRPSSSTIQGMHTDITALSSRPSISREALRIFNEEGFRAFWRGNLVTIAHRVPYSAVNFYAYEQFKSGSHLKGFLPLQHLQSF FGLERHGGNSTANVAVRFVGGGLAGGNRCLCYVSIGSCSDSSLSPGCGTKLSHIGFCVYESLKSFWEAERPKDSTRMVSLGSQDMMMAHSTLTSNDMQLV TNQQIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19130			S-locus lectin protein kinase ...		Lus10024343 [exp]	0	1
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10019835 [exp]	1.0	0.8084
AT4G04610		1-Apr, PRH19, A...	PAPS REDUCTASE HOMOLOG 19, APS...		Lus10020040 [exp]	5.3	0.7722
AT4G21990		3-Apr, PRH-26, ...	PAPS REDUCTASE HOMOLOG 26, APS...		Lus10015560 [exp]	11.0	0.7654
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10013703 [exp]	12.0	0.7571
AT1G04770			Tetratricopeptide repeat (TPR)...		Lus10000753 [exp]	38.7	0.7432
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10008022 [exp]	44.0	0.7125
AT4G22240			Plastid-lipid associated prote...		Lus10001099 [exp]	44.4	0.7378
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10023077 [exp]	44.9	0.7499
AT5G10050			NAD(P)-binding Rossmann-fold s...		Lus10019684 [exp]	45.3	0.7369
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10029674 [exp]	46.6	0.7213

Compare expression of checked genes

Lus10024343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.