Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53940 417 / 4e-147 Mitochondrial substrate carrier family protein (.1) AT2G37890 384 / 2e-134 Mitochondrial substrate carrier family protein (.1) AT3G55640 368 / 5e-128 Mitochondrial substrate carrier family protein (.1) AT4G01100 171 / 1e-50 ADNT1 adenine nucleotide transporter 1 (.1.2) AT5G61810 148 / 5e-42 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT4G26180 147 / 9e-42 Mitochondrial substrate carrier family protein (.1) AT5G51050 150 / 2e-41 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT4G32400 142 / 2e-39 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT1G14560 126 / 6e-34 Mitochondrial substrate carrier family protein (.1) AT3G21390 126 / 7e-34 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021497 [exp] 476 / 4e-170 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10022597 [exp] 457 / 8e-163 AT3G53940 486 / 3e-173 Mitochondrial substrate carrier family protein (.1) Lus10012658 [exp] 376 / 6e-132 AT3G53940 327 / 5e-112 Mitochondrial substrate carrier family protein (.1) Lus10004689 [exp] 371 / 4e-129 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10040257 [exp] 249 / 8e-82 AT3G55640 358 / 2e-124 Mitochondrial substrate carrier family protein (.1) Lus10032365 [exp] 168 / 2e-49 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 164 / 3e-48 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033947 [exp] 163 / 2e-47 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 157 / 2e-45 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G103300 [exp] 444 / 8e-158 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 441 / 1e-156 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.008G060900 [exp] 376 / 3e-131 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.010G197400 [exp] 375 / 6e-131 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) Potri.014G095400 [exp] 175 / 2e-52 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 170 / 2e-50 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.001G094100 [exp] 169 / 9e-50 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 168 / 1e-49 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.012G110700 [exp] 150 / 7e-42 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.015G108900 [exp] 148 / 6e-41 AT5G51050 725 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10024344 pacid=23174898 polypeptide=Lus10024344 locus=Lus10024344.g ID=Lus10024344.BGIv1.0 annot-version=v1.0 ATGGAAGCTAGGGTTGGCGTGGTTGTGGACGGAGGCCAGAGAGCTCTCAATTCCGCCGCCGCCGGAACCGTCGTCGACGCTGCTGGTTCCCGCAAGTTAC TCAAACAGCAGCAATCCCATGTCGAAAGCCTCCAGCACATGCTCGCCGGTGGAATTGCCGGCGCCTTTAGCAAAACCTGCACTGCTCCCATGGCTCGCCT CACAATCCTTTTCCAGATTCAGGGGATGCACACTGATATTACAGCACTAAGCAGTAGGCCGAGCATTTCACGAGAAGCTTTGCGTATATTTAACGAGGAA GGGTTTAGAGCATTTTGGAGAGGAAATCTTGTCACAATTGCTCACCCTGTACGTTTCGTCGGTGGAGGTTTGGCCGGGGTAACCGCTGCCTCTGCTACGT ATCCATTGGATCTTGTTCGGACTCGTCTCTCAGCCCAGAGAAACACGTTGTACTATAGAGGTATTTTGCATTCGTTCAGTACCATTTGCAAGGAAGAAGG GTTCTTTGGACTGTACAAAGGACTCGGCCCTACCCTATTGGGTGTTGGACCAAACCTAGCCATAGGATTTTGTGTATACGAGTCTCTCAAATCATTCTGG GAAGCTGAAAGACCGAAGGATTCCACTAGAATGGTTAGCCTTGGTTGTGGCAGCCTGTCTGGCATTGCTGCTTCAACAGTGACATTTCCCATCGACCTTG TGCGGAGAAGAATGCAGTTAGAAGGAGCTGGTGGTACAGCCCGTGTTTACTCGGGAGGCTTTCTTGGGACGTTCGGGCACATATTCAAGAACGAAGGCTT GCGAGGCTTGTACAGAGGGATCCTCCCAGAATTCTATAAGGTGGTTCCTGGTGTCGGCATCGTTTTCATGACCTATGAGTCACTAAAGATGGTCTTATCT GGTCCTCCCAGTTAA
AA sequence Show only first row Show all	>Lus10024344 pacid=23174898 polypeptide=Lus10024344 locus=Lus10024344.g ID=Lus10024344.BGIv1.0 annot-version=v1.0 MEARVGVVVDGGQRALNSAAAGTVVDAAGSRKLLKQQQSHVESLQHMLAGGIAGAFSKTCTAPMARLTILFQIQGMHTDITALSSRPSISREALRIFNEE GFRAFWRGNLVTIAHPVRFVGGGLAGVTAASATYPLDLVRTRLSAQRNTLYYRGILHSFSTICKEEGFFGLYKGLGPTLLGVGPNLAIGFCVYESLKSFW EAERPKDSTRMVSLGCGSLSGIAASTVTFPIDLVRRRMQLEGAGGTARVYSGGFLGTFGHIFKNEGLRGLYRGILPEFYKVVPGVGIVFMTYESLKMVLS GPPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53940			Mitochondrial substrate carrie...		Lus10024344 [exp]	0	1
AT2G16485			nucleic acid binding;zinc ion ...		Lus10018078 [exp]	8.7	0.8677
AT2G16485			nucleic acid binding;zinc ion ...		Lus10042072 [exp]	8.8	0.8888
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10042065 [exp]	9.1	0.8969
AT5G65640	bHLH	bHLH093	beta HLH protein 93 (.1.2)		Lus10039631 [exp]	17.1	0.8790
AT5G50740			Heavy metal transport/detoxifi...		Lus10030514 [exp]	20.6	0.8942
AT3G02320			N2,N2-dimethylguanosine tRNA m...		Lus10020290 [exp]	23.2	0.8859
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10023254 [exp]	24.0	0.8757
AT5G67610			Uncharacterized conserved prot...		Lus10019140 [exp]	27.9	0.8475
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10009186 [exp]	31.2	0.8774
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10035658 [exp]	33.8	0.8743

Compare expression of checked genes

Lus10024344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.