Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28470 607 / 0 Major facilitator superfamily protein (.1) AT1G69870 424 / 2e-141 NRT1.7 nitrate transporter 1.7 (.1) AT1G27080 404 / 1e-134 NRT1.6 nitrate transporter 1.6 (.1) AT5G62680 400 / 3e-132 Major facilitator superfamily protein (.1) AT3G47960 384 / 7e-126 Major facilitator superfamily protein (.1) AT1G18880 378 / 5e-124 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT1G52190 356 / 2e-115 Major facilitator superfamily protein (.1) AT1G69860 345 / 6e-112 Major facilitator superfamily protein (.1) AT3G54140 345 / 2e-111 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT3G16180 345 / 3e-111 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042182 [exp] 602 / 0 AT5G28470 620 / 0.0 Major facilitator superfamily protein (.1) Lus10037221 [exp] 424 / 2e-141 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10036705 [exp] 421 / 4e-140 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10015351 [exp] 417 / 3e-139 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10036669 [exp] 398 / 2e-131 AT5G62680 758 / 0.0 Major facilitator superfamily protein (.1) Lus10033106 [exp] 385 / 1e-126 AT5G62680 761 / 0.0 Major facilitator superfamily protein (.1) Lus10035860 [exp] 363 / 1e-117 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10041466 [exp] 360 / 3e-116 AT1G68570 850 / 0.0 Major facilitator superfamily protein (.1) Lus10017817 [exp] 351 / 5e-113 AT1G68570 637 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G091600 [exp] 771 / 0 AT5G28470 539 / 0.0 Major facilitator superfamily protein (.1) Potri.016G103200 [exp] 751 / 0 AT5G28470 534 / 0.0 Major facilitator superfamily protein (.1) Potri.001G351200 [exp] 436 / 1e-146 AT5G62680 677 / 0.0 Major facilitator superfamily protein (.1) Potri.017G076800 [exp] 434 / 1e-145 AT3G47960 680 / 0.0 Major facilitator superfamily protein (.1) Potri.012G071500 [exp] 425 / 3e-142 AT5G62680 779 / 0.0 Major facilitator superfamily protein (.1) Potri.010G034700 [exp] 420 / 2e-140 AT1G69870 702 / 0.0 nitrate transporter 1.7 (.1) Potri.012G071400 [exp] 410 / 1e-136 AT5G62680 689 / 0.0 Major facilitator superfamily protein (.1) Potri.010G126300 [exp] 352 / 4e-114 AT1G68570 901 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 348 / 2e-112 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.001G185700 [exp] 343 / 2e-110 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10024345 pacid=23174904 polypeptide=Lus10024345 locus=Lus10024345.g ID=Lus10024345.BGIv1.0 annot-version=v1.0 ATGAAGGAAGAAACTTCAGTGGCAGTCGCTGCTTCAATGACGGAAGATGACTCTTCCTTGGCTCCTCCTCCCCCTAATCGGCCAGAGCCCGGCGGATGGC AATCAGTCAAATACATCCTTGGTAATGAGTCTTTCGAGAAGTTGGCTGCAATGAGTCTGGTCGGAAATCTGACAGTGTATCTCCAATCCAAATACAACAT GGATAGCATCCTGGTGGTTAATGTCTTCAATGTCTGGTCTGGTTCTTCAAATCTCACACCTCTCCTTGGTGCTTTCCTTTCTGATGCATACCTCGGAAAA TTCCACACCCTTCTCTACGGCTCGATTGCCTCGTTCGTGGGAATGGCTACTGTAACTCTGACAGCAGGAGTACCAGAATTAAGGCCTCCAAACTGCAAAG AAGGGTCTAATTGCCAACAGGCTAGCGGCAGTCAGTTAGCAGTCCTCTACGTCGGCCTCACACTGCTGGCGATCGGCGCAGGAGGGATTCGGCCTTGCAA CATTGCCTTCGGTGCTGACCAATTCGACACCAGGACCGAAAAGGGTAAAGCTCAGTTGGAGAGTTTTTTCAACTGGTGGTACTTCTCTTTCACAATGGCG CTTGTCATAGCTCTCACAGTTGTGGTCTACATACAGACTAACATCAGCTGGGTTATAGGTTTCGCGGTCCCCACCATCTGCCTATTTGTCTCGATTTCCT TGTTCCTGATAGGGAAGCACACTTACATCATCAAGAAGGCGCAAGGTAGCATCTTTGTCGACATGGCTAAGGTCGTTGTGGCTTCCTGTAGGAAGTGGAA TGTGAATTTCGAGACTTCTCCCGGGTTGTCCCTCCACGATCCGCCTAGTGCGATCGGGACGGAAGAAGATCAGGAACCGAAGCTCCCCCACACAGAAAGA TTCAAGCTTTTGGATAAAGCTGCTGTGATTATTGATAAAAGTACTGAGTTGGATGAGTTCGGGAGGTCCATTAATCCGTGGCGATTGTGCAGTGTTCAAC AAGTGGAACAGCTTAAACTCCTTGTGGGAATCGTGCCGGTTTGGCTGACAGGAGTCGGATGTTTTTTGGCTATGGATCAGATGAGCACTTTAGGGATGAT GCAAGCAATTCAGTGCAACAACCAAGTGGGGAACTTCAAAATCCCACCGGCCTGGATGGGATTAGTTTCGATGATCGGTCTGTCGATATGGATCTTCATT TACGAACAGGTCTACCTTCCTATTGCCAAGAGGACGACGAACAAGGACAAGAGGATGACAATGAGACAGCGCATCAATACGGGGATCGTGATGGCGATCC TGTGCATGATCGTGGCAATCGCTGTTGAAAAGAAACGAAGAGGGTTAGCTCTGAAACACGGTTCGTTCACTTCACCTCTGAGCATATTTGCTCTATTGCC GCAATTTGCTCTATCGGGTTTGACCGAAGCGTTTGCTGCTATTGCTGTAATGGAGTTTCTTACAACGCATTTACCGGAATCCATGAGGACAATCGCGGGG GCGGTGTTTTTTCTGAGTTTGTCCGCGACTAGTTACTTGAATGCTGCATTGGTGAATCTGATCCACCACATTACAGCTGGGAATGGGCATAGGCCGTGGT TAGGAGGGCGTGACTTGAATCAAGTTAGAATTGATAACTACTTCTTTTTGATTGCTGGCCTGGCAGTTGTGAACTTGCTCTACTTCAATTTCTTTTCTTA CCGATATTTGAAGCCAGGGGCTCAGAAGAGCTCCGGATTGGTAGATGAGGAAGTCGGATTAGGGAACAGACATGGAGAACAAGGTTAG
AA sequence Show only first row Show all	>Lus10024345 pacid=23174904 polypeptide=Lus10024345 locus=Lus10024345.g ID=Lus10024345.BGIv1.0 annot-version=v1.0 MKEETSVAVAASMTEDDSSLAPPPPNRPEPGGWQSVKYILGNESFEKLAAMSLVGNLTVYLQSKYNMDSILVVNVFNVWSGSSNLTPLLGAFLSDAYLGK FHTLLYGSIASFVGMATVTLTAGVPELRPPNCKEGSNCQQASGSQLAVLYVGLTLLAIGAGGIRPCNIAFGADQFDTRTEKGKAQLESFFNWWYFSFTMA LVIALTVVVYIQTNISWVIGFAVPTICLFVSISLFLIGKHTYIIKKAQGSIFVDMAKVVVASCRKWNVNFETSPGLSLHDPPSAIGTEEDQEPKLPHTER FKLLDKAAVIIDKSTELDEFGRSINPWRLCSVQQVEQLKLLVGIVPVWLTGVGCFLAMDQMSTLGMMQAIQCNNQVGNFKIPPAWMGLVSMIGLSIWIFI YEQVYLPIAKRTTNKDKRMTMRQRINTGIVMAILCMIVAIAVEKKRRGLALKHGSFTSPLSIFALLPQFALSGLTEAFAAIAVMEFLTTHLPESMRTIAG AVFFLSLSATSYLNAALVNLIHHITAGNGHRPWLGGRDLNQVRIDNYFFLIAGLAVVNLLYFNFFSYRYLKPGAQKSSGLVDEEVGLGNRHGEQG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28470			Major facilitator superfamily ...		Lus10024345 [exp]	0	1
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Lus10023419 [exp]	2.0	0.8536
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10005436 [exp]	3.0	0.8550
AT5G04010			F-box family protein (.1)		Lus10031031 [exp]	4.0	0.8161
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10035663 [exp]	5.3	0.8289
AT1G15170			MATE efflux family protein (.1...		Lus10018135 [exp]	7.5	0.8235
AT4G25470	AP2_ERF	DREB1C, FTQ4, C...	FREEZING TOLERANCE QTL 4, DRE/...		Lus10035566 [exp]	8.4	0.8132
AT2G39380		ATEXO70H2	exocyst subunit exo70 family p...		Lus10005435 [exp]	8.9	0.8281
AT1G32920			unknown protein		Lus10001526 [exp]	9.5	0.8253
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10002770 [exp]	9.8	0.7632
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10035828 [exp]	10.2	0.7867

Compare expression of checked genes

Lus10024345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.