Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37860 395 / 4e-138 LCD1 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) AT5G22790 379 / 1e-131 RER1 reticulata-related 1 (.1) AT3G08640 99 / 4e-24 Protein of unknown function (DUF3411) (.1) AT3G08630 96 / 7e-23 Protein of unknown function (DUF3411) (.1) AT5G12470 92 / 4e-21 Protein of unknown function (DUF3411) (.1) AT3G56140 87 / 5e-19 Protein of unknown function (DUF399 and DUF3411) (.1) AT2G40400 81 / 3e-17 Protein of unknown function (DUF399 and DUF3411) (.1), Protein of unknown function (DUF399 and DUF3411) (.2) AT5G24690 76 / 1e-15 Protein of unknown function (DUF3411) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012657 [exp] 468 / 2e-168 AT2G37860 414 / 1e-144 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Lus10043364 [exp] 330 / 2e-112 AT5G22790 428 / 1e-148 reticulata-related 1 (.1) Lus10019521 [exp] 181 / 2e-55 AT2G37860 280 / 1e-91 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Lus10003180 [exp] 96 / 1e-22 AT5G12470 457 / 6e-161 Protein of unknown function (DUF3411) (.1) Lus10009956 [exp] 94 / 8e-22 AT5G12470 459 / 8e-162 Protein of unknown function (DUF3411) (.1) Lus10019744 [exp] 93 / 1e-21 AT5G12470 452 / 1e-159 Protein of unknown function (DUF3411) (.1) Lus10040960 [exp] 94 / 2e-21 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10016379 [exp] 93 / 2e-21 AT5G12470 451 / 1e-158 Protein of unknown function (DUF3411) (.1) Lus10003242 [exp] 93 / 2e-21 AT3G08640 372 / 6e-127 Protein of unknown function (DUF3411) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G103100 [exp] 426 / 6e-150 AT2G37860 510 / 2e-180 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Potri.009G150400 [exp] 397 / 4e-139 AT5G22790 518 / 0.0 reticulata-related 1 (.1) Potri.006G111300 [exp] 100 / 3e-24 AT3G08640 349 / 8e-120 Protein of unknown function (DUF3411) (.1) Potri.016G140700 [exp] 98 / 2e-23 AT3G08640 357 / 5e-123 Protein of unknown function (DUF3411) (.1) Potri.009G051800 [exp] 95 / 2e-22 AT5G12470 467 / 1e-164 Protein of unknown function (DUF3411) (.1) Potri.001G256300 [exp] 94 / 5e-22 AT5G12470 443 / 3e-155 Protein of unknown function (DUF3411) (.1) Potri.001G262200 [exp] 94 / 6e-22 AT5G12470 471 / 1e-166 Protein of unknown function (DUF3411) (.1) Potri.008G074300 [exp] 83 / 8e-18 AT3G56140 968 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Potri.003G019600 [exp] 79 / 2e-16 AT5G24690 599 / 0.0 Protein of unknown function (DUF3411) (.1) Potri.001G210500 [exp] 78 / 3e-16 AT5G24690 602 / 0.0 Protein of unknown function (DUF3411) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11891 [flax] [poplar] RETICULATA-like Protein RETICULATA-related
Representative CDS sequence Show only first row Show all	>Lus10024346 pacid=23174991 polypeptide=Lus10024346 locus=Lus10024346.g ID=Lus10024346.BGIv1.0 annot-version=v1.0 ATGTTTGAAGCTGCCAAGAGTGAAGGAATCCGCAAATTGCTTCTACTCAGATACCTGGACTTGCAGGGTGCTGGAGGAGTTTTGGGATTCCTGATGAAGT CTTGCGCTATCCTTTGCAATAGAATGTTGGCAGATCCCTCCTTTCTTTTCAAAATTGGAACTGAGATAGTGATTGATTCTTGCTGTGCTACATTTGCTGA AGTTCAAAAGAGGGGGAAAGACTTCTGGGCGGAGTTTGAACTGTATCTTGCAGATATGATAGTTGGCGTGGTGGTTAACATAGCTTTGGTTGGTATGTTA GCACCATATGCACGGTTTGGGAAGCTATCGGCTTCCAAAGGACTCCTCGGTCAACTCCAATATGCTTATGCAGCTATTCCTAGTCGTGTTTTTGAAGCTG AAAGGCCAGGGTGCAGATTCTCCAACAAGCAGAGACTTGCTACATATTTCTTCAAGGCAAGCTTGGGTTTCTTGTATGGAGGAGTTGGCTTTTCATGCGG TATCGTAGGCCAAGGCATAGCAAATCTCATCATGACTGCAAAGAGGAGTATAAAGAAATCGGAAGAAGACATCCCAGTGCCACCTTTGGTGAGAAGTGCA GCTCTCTGGGGCGTTTTCATGATGGTCTCATCGAACACCCGCTACCAAGTTGTCAACGGATTAGAATGCCTAGTAGAAGCTTCGCCCTTGGCGAAAAGGG TTCCCCAAATTGCGCTGGCATTTACTGGTGGTGTCCGATTCGCAAATAACGTCTACGGAGGGATGCAGTTCGTTGACTGGGCTAGATAG
AA sequence Show only first row Show all	>Lus10024346 pacid=23174991 polypeptide=Lus10024346 locus=Lus10024346.g ID=Lus10024346.BGIv1.0 annot-version=v1.0 MFEAAKSEGIRKLLLLRYLDLQGAGGVLGFLMKSCAILCNRMLADPSFLFKIGTEIVIDSCCATFAEVQKRGKDFWAEFELYLADMIVGVVVNIALVGML APYARFGKLSASKGLLGQLQYAYAAIPSRVFEAERPGCRFSNKQRLATYFFKASLGFLYGGVGFSCGIVGQGIANLIMTAKRSIKKSEEDIPVPPLVRSA ALWGVFMMVSSNTRYQVVNGLECLVEASPLAKRVPQIALAFTGGVRFANNVYGGMQFVDWAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37860		LCD1	LOWER CELL DENSITY 1, Protein ...		Lus10024346 [exp]	0	1
AT1G14770			RING/FYVE/PHD zinc finger supe...		Lus10015562 [exp]	13.5	0.7779
					Lus10033670 [exp]	15.0	0.7162
AT1G07840			Sas10/Utp3/C1D family (.1.2.3)		Lus10029397 [exp]	16.3	0.7555
AT5G18475			Pentatricopeptide repeat (PPR)...		Lus10041927 [exp]	16.9	0.7370
AT3G25060			Tetratricopeptide repeat (TPR)...		Lus10025915 [exp]	22.7	0.7513
AT3G08000			RNA-binding (RRM/RBD/RNP motif...		Lus10015146 [exp]	24.9	0.7226
AT2G18400			ribosomal protein L6 family pr...		Lus10014306 [exp]	25.5	0.7380
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10042038 [exp]	27.1	0.7511
AT1G13030			sphere organelles protein-rela...		Lus10006465 [exp]	31.7	0.7405
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10021016 [exp]	32.9	0.7077

Compare expression of checked genes

Lus10024346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.