Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18650 52 / 7e-08 MADS AGL103 AGAMOUS-like 103 (.1) AT4G02235 49 / 3e-07 MADS AGL51 AGAMOUS-like 51 (.1) AT5G40120 49 / 5e-07 MADS AGL76 AGAMOUS-like 76 (.1) AT4G11250 49 / 7e-07 MADS AGL52 AGAMOUS-like 52 (.1) AT5G65330 48 / 1e-06 MADS AGL78 AGAMOUS-like 78 (.1) AT5G38740 48 / 1e-06 MADS AGL77 AGAMOUS-like 77 (.1) AT5G40220 47 / 2e-06 MADS AGL43 AGAMOUS-like 43 (.1) AT5G58890 47 / 3e-06 MADS AGL82 AGAMOUS-like 82 (.1) AT5G39810 47 / 3e-06 MADS AGL98 AGAMOUS-like 98 (.1) AT5G39750 47 / 3e-06 MADS AGL81, EMB3008 EMBRYO DEFECTIVE 3008, AGAMOUS-like 81 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021494 [exp] 121 / 4e-35 AT3G18650 65 / 8e-13 AGAMOUS-like 103 (.1) Lus10022594 [exp] 117 / 1e-33 AT3G18650 61 / 2e-11 AGAMOUS-like 103 (.1) Lus10012656 [exp] 100 / 1e-27 AT3G18650 59 / 9e-12 AGAMOUS-like 103 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G238900 [exp] 54 / 5e-09 AT3G18650 66 / 1e-12 AGAMOUS-like 103 (.1) Potri.004G222200 [exp] 52 / 3e-08 AT5G41200 65 / 5e-12 AGAMOUS-like 75 (.1) Potri.015G077800 [exp] 46 / 3e-06 AT4G02235 45 / 7e-06 AGAMOUS-like 51 (.1) Potri.008G020300 [exp] 45 / 8e-06 AT3G18650 75 / 3e-15 AGAMOUS-like 103 (.1) Potri.007G120002 [exp] 39 / 0.0002 AT1G77980 97 / 1e-25 AGAMOUS-like 66 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10024347 pacid=23174942 polypeptide=Lus10024347 locus=Lus10024347.g ID=Lus10024347.BGIv1.0 annot-version=v1.0 ATGTCTCGGTCACCACAACTGAAGAAGAGGAGAAGAACCCTCAAGAAGAAAGCGGCGGAGCTCTCTACTCTCTGCGGAATCGACGTCGCCTACGTTTGCT TCGAACCCAACGGCGGCGTCGATACCTGGCCGGAGGATCCAAACAAGGTCAAAGACATCATTCTCAAGTACAGGCAGGTCAAATCCGTTGAAAAATATCC GGATTCTACCGCCGCCGCCGCTCCCGGTTCCTCTCAAACTTACTCCGACGTAACCCAGAACGACGGCGGCGGTGGCGAAATCCAGGAACCGCTCAAAAAG CTGCAAGATTGGCTCTCGAGACACAATCAATTGTCGCAGGAGCAATTGGCTGGTGCGTATAGATTCGCTGACAAGAAGATAAAGAGCATTAGAAGGAGAA TGGCGAGTCTGAAGCCCGACGAGCAAACCCTAGAAAGAAGGCGGCGGCGGACCAAAGACCGGTCTGAAGCTTCAAAATTGATCGATTTCGTCGGTTCGTG GCCGGCAAGTTCGCAACCTGAGCAAACGACGTGTCGTTTTAGCGACAGCAGCCCCCTCCGAATTGTTTGTTGA
AA sequence Show only first row Show all	>Lus10024347 pacid=23174942 polypeptide=Lus10024347 locus=Lus10024347.g ID=Lus10024347.BGIv1.0 annot-version=v1.0 MSRSPQLKKRRRTLKKKAAELSTLCGIDVAYVCFEPNGGVDTWPEDPNKVKDIILKYRQVKSVEKYPDSTAAAAPGSSQTYSDVTQNDGGGGEIQEPLKK LQDWLSRHNQLSQEQLAGAYRFADKKIKSIRRRMASLKPDEQTLERRRRRTKDRSEASKLIDFVGSWPASSQPEQTTCRFSDSSPLRIVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18650	MADS	AGL103	AGAMOUS-like 103 (.1)		Lus10024347 [exp]	0	1
AT4G05160			AMP-dependent synthetase and l...		Lus10013831 [exp]	6.0	0.7755
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10033637 [exp]	8.4	0.7801
AT2G45910			U-box domain-containing protei...		Lus10036359 [exp]	17.1	0.7561
AT5G57950			26S proteasome regulatory subu...		Lus10022151 [exp]	20.2	0.7117
AT2G40390			unknown protein		Lus10017423 [exp]	20.3	0.7316
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10017777 [exp]	21.6	0.7247
AT2G04480			unknown protein		Lus10001750 [exp]	23.5	0.7281
AT2G43950		OEP37, ATOEP37	ARABIDOPSIS CHLOROPLAST OUTER ...		Lus10013621 [exp]	32.7	0.6706
AT5G13340			unknown protein		Lus10035960 [exp]	38.2	0.7494
AT3G20740		FIE1, FIS3, FIE	FERTILIZATION-INDEPENDENT ENDO...		Lus10043071 [exp]	42.1	0.7043

Compare expression of checked genes

Lus10024347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.