Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34300 363 / 2e-112 lectin protein kinase family protein (.1) AT1G11410 278 / 6e-81 S-locus lectin protein kinase family protein (.1) AT4G21390 272 / 1e-78 B120 S-locus lectin protein kinase family protein (.1) AT1G61430 268 / 1e-77 S-locus lectin protein kinase family protein (.1) AT2G19130 266 / 8e-77 S-locus lectin protein kinase family protein (.1) AT4G21380 265 / 4e-76 ARK3 receptor kinase 3 (.1) AT5G24080 255 / 6e-76 Protein kinase superfamily protein (.1) AT5G35370 265 / 8e-76 S-locus lectin protein kinase family protein (.1) AT1G61480 263 / 9e-76 S-locus lectin protein kinase family protein (.1) AT4G00340 258 / 8e-74 RLK4 receptor-like protein kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024343 [exp] 1347 / 0 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1) Lus10032944 [exp] 1298 / 0 AT2G19130 371 / 1e-115 S-locus lectin protein kinase family protein (.1) Lus10004283 [exp] 586 / 0 AT2G19130 339 / 6e-104 S-locus lectin protein kinase family protein (.1) Lus10006052 [exp] 368 / 4e-114 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10013252 [exp] 359 / 2e-111 AT1G34300 378 / 7e-119 lectin protein kinase family protein (.1) Lus10029802 [exp] 341 / 2e-104 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10004365 [exp] 328 / 2e-99 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10024195 [exp] 327 / 6e-99 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10039315 [exp] 317 / 1e-94 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G102500 [exp] 1038 / 0 AT1G34300 360 / 1e-111 lectin protein kinase family protein (.1) Potri.016G102600 [exp] 1032 / 0 AT1G34300 367 / 1e-114 lectin protein kinase family protein (.1) Potri.016G102700 [exp] 1029 / 0 AT1G34300 356 / 5e-110 lectin protein kinase family protein (.1) Potri.016G102900 [exp] 1028 / 0 AT1G34300 359 / 2e-111 lectin protein kinase family protein (.1) Potri.006G091400 [exp] 1009 / 0 AT1G34300 372 / 3e-116 lectin protein kinase family protein (.1) Potri.013G095800 [exp] 642 / 0 AT2G19130 350 / 2e-108 S-locus lectin protein kinase family protein (.1) Potri.013G096400 [exp] 639 / 0 AT2G19130 347 / 2e-107 S-locus lectin protein kinase family protein (.1) Potri.013G086100 [exp] 616 / 0 AT4G00340 300 / 1e-89 receptor-like protein kinase 4 (.1) Potri.013G096000 [exp] 560 / 0 AT2G19130 300 / 1e-90 S-locus lectin protein kinase family protein (.1) Potri.013G115700 [exp] 386 / 4e-121 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10024348 pacid=23175018 polypeptide=Lus10024348 locus=Lus10024348.g ID=Lus10024348.BGIv1.0 annot-version=v1.0 ATGGAAACTTCCTTTCAGCAATCAAAACTCTTAAATAAAGAGCAACTTCCTCCCACCGGCGAACGACTCAGTCAGTCACTTCTTCTTCTGATTTCTCTGT TCAAGTCCAAAAAAATGGAGCTTCAAACTTGTAAAGCTCCAAACTTTTTCATCATCCTTTTTCCCATCCTCGTTCTATTTCCCCATCATGGGATTTCCTC GCAATCCCAGCTGCGAAGAGGCTCATCTCTATCAGTAGAATCACAAACAAAAGACTTCCTCCTTTCCCCAGACAAAACCTTCTCTTGCGGCTTCTACGGC TTAAATCAAAACGCCTACTGGTTCTCAATCTGGTTCACAAACTCCACCGACAAAACCGTGGTCTGGACAGCCAACCGAAACAGACCGGTCAACGCCAAAG GCTCCCAACTCTCCTTCCGTCCAAACAGCGTCTTAGCCTTAACCGACGTCGACGGCTTCCTCGTCTGGGAAACCAACACCAGCTCCACCGGCGCTTCCGT CGCCGAGCTTCTCAACTCCGGCAACCTCGTCCTCAAAAACCCACAAGGTAAAATCCTATGGCAGAGCTTCGATTGCCCTTCCAACACTCTGTTACCGACC CAAATCTTTACAAAGCGTTCGACTTTAGTCTCGAATTTGGGCCGGGGCAATTACGGGTCGGGTTATTTCACCTTCCTTTTCGATAATGATAACGTATTGA GGATGATATACGACGGTCCCGACATTTCAAGTATCTACTGGCCTACTCCGGATTTCACAGTTTTCCAGAACGGACGGACGAATTATAATAGTAGTAGGAT TGCTTTGCTTGATGAGATGGGAGGTTTTGTCTCTAGTGACAGGTTACAGTTCAGTGCTTCTGATTTTGGTGTTCACGGCGTTAAACGGAGGTTGACGATG GATACCGACGGAAACTTGAGGCTTTATAGCTTGAATAGTTTGACAGGGTCGTGGGTGATTACGTGGCAGGCAATTGATAATCTGTGTAGTGTTCATGGGA TTTGTGGAAGGAATGGGATATGTTTGTACACTCCAGTTCCTAAATGTTCATGTGCTCCTGGTTATGAAGTCAACGATCCTAAAGATTGGAGTAAAGGGTG TAAACCGGTTGTTAAAAGATCATGTCTTGGAAAGAATCAGGTGAAATTTGTTAAAGTTCCACATGTAGATTTCTGGGGGTTTGACCTCAATTACAGTGCA CAAGTTTCGATGGAGACTTGCAGGGATCTTTGCTTGGATGATTGTCAGTGTGATGCCTATAGCTATAGGCTGACTGGGGAAGCGGTGTGTTATACTAAGA GTATACTGTTCAATGGCTACCAGTCTACAGCGTTTCCGGGGGACATATACTTGAAGCTGCCGCGGAGTGTTGATGTTGTTGCGAAGGAAGAAGAAGCTCC GAATCTAGGTGGGAGCGACATCGTTTGCGAAAACGGAGGGTCGAAGATGGAGATTGGTTCTCTGTCTATGTACGAGATAGAGACCAAGAGAGTAAGGTGG GTTTATCTTTACTCGTTCGCTTGCACACTTGGTGCGATCGAGATCCTGTTGATAGGTGTGGGTTGGTGGTTTCTTAACACAATGCTAAGGATGCCAGATT CGGTAGAGATGGGGTATCACGCGATAGCGAGTCAGTTCCGGAGGTTTAGCTACGGAGAATTGAAGAAGGCGACCAAGAATTTCAAGGAAGAGCTCGGAAG GGGAGGGTCGGGGGTTGTGTATAAAGGTGTTTTGGGCGACGAGAGGGCCGTGGCTGTGAAGAGGCTCGGAGATTCGTATCAGGGCGAGGATGTGTTCTGG GCGGAAGTTACCACGATTGGGAAGATCAACCATATGAACCTGGTGAGAATGTGGGGGTTCTGTTCCGAAAACAGGCATAGGATGTTGGTGTATGAGTATC TAAAGCATCAATCGTTAGATAACTATCTTTTCTCGAGCAGCGGGACCAATTCTCTCGAATGGAAAGTGAGGTTCAAGGTTGCTCTTGGGACGGCGAAAGG TTTGGCTTATCTTCACCACGAGTGTCTCGAATGGGTCATACATTGCGATGTGAAGCCCGAGAACATACTCTTGGACGACGACTTCGAGGCCAAAATTGCT GATTTCGGGCTCGCAAAGTTGTCTCAAAGGGACAACAACAGCTCTCAGTTCACCAAGATCAGAGGGACCAAGGGGTACATGGCTCCCGAGTGGGCTTCGA ATCTCCCCATTACAGCAAAAGTCGATGTCTACAGCTATGGAGTTGTAATTCTTGAACTGGTGAAAGGAATTAGGCTCTCCGACATGGTGGAGGAGGAGGA AGCTGAGTTGGCTAGGTTTATCAGGATATCCAAAAGGAAAATCATTTCCGGAGGAGGAGAGTCGTGGGTTGATGATCAGGAGATGGTGGATCCGAAGTTG AAAGGAAAGTTTATTCGTAAACAGGCGTCGAAAATGATCGAAATCGGGCTGGCTTGTGTGGATGAAGACAGAAATAAGAGGCCAACAATGGACATTGTAG TCCAATCTCTACTAGATTGTCAGGATTACAAGCCAAACTCAACTGTCCCTGAATCATCATCATCATCTCCCTAG
AA sequence Show only first row Show all	>Lus10024348 pacid=23175018 polypeptide=Lus10024348 locus=Lus10024348.g ID=Lus10024348.BGIv1.0 annot-version=v1.0 METSFQQSKLLNKEQLPPTGERLSQSLLLLISLFKSKKMELQTCKAPNFFIILFPILVLFPHHGISSQSQLRRGSSLSVESQTKDFLLSPDKTFSCGFYG LNQNAYWFSIWFTNSTDKTVVWTANRNRPVNAKGSQLSFRPNSVLALTDVDGFLVWETNTSSTGASVAELLNSGNLVLKNPQGKILWQSFDCPSNTLLPT QIFTKRSTLVSNLGRGNYGSGYFTFLFDNDNVLRMIYDGPDISSIYWPTPDFTVFQNGRTNYNSSRIALLDEMGGFVSSDRLQFSASDFGVHGVKRRLTM DTDGNLRLYSLNSLTGSWVITWQAIDNLCSVHGICGRNGICLYTPVPKCSCAPGYEVNDPKDWSKGCKPVVKRSCLGKNQVKFVKVPHVDFWGFDLNYSA QVSMETCRDLCLDDCQCDAYSYRLTGEAVCYTKSILFNGYQSTAFPGDIYLKLPRSVDVVAKEEEAPNLGGSDIVCENGGSKMEIGSLSMYEIETKRVRW VYLYSFACTLGAIEILLIGVGWWFLNTMLRMPDSVEMGYHAIASQFRRFSYGELKKATKNFKEELGRGGSGVVYKGVLGDERAVAVKRLGDSYQGEDVFW AEVTTIGKINHMNLVRMWGFCSENRHRMLVYEYLKHQSLDNYLFSSSGTNSLEWKVRFKVALGTAKGLAYLHHECLEWVIHCDVKPENILLDDDFEAKIA DFGLAKLSQRDNNSSQFTKIRGTKGYMAPEWASNLPITAKVDVYSYGVVILELVKGIRLSDMVEEEEAELARFIRISKRKIISGGGESWVDDQEMVDPKL KGKFIRKQASKMIEIGLACVDEDRNKRPTMDIVVQSLLDCQDYKPNSTVPESSSSSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19130			S-locus lectin protein kinase ...		Lus10024348 [exp]	0	1
AT3G59080			Eukaryotic aspartyl protease f...		Lus10020759 [exp]	1.4	0.8718
AT2G26530		AR781	Protein of unknown function (D...		Lus10032766 [exp]	3.5	0.8385
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10030751 [exp]	4.2	0.7863
AT2G39650			Protein of unknown function (D...		Lus10040293 [exp]	6.7	0.8021
AT4G14450		ATBET12	unknown protein		Lus10041157 [exp]	7.0	0.7911
AT2G47890	CO	COL13	B-box type zinc finger protein...		Lus10040900 [exp]	8.8	0.7791
AT4G31980			unknown protein		Lus10024948 [exp]	10.1	0.6746
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10018311 [exp]	13.0	0.7815
AT1G21010			unknown protein		Lus10035664 [exp]	13.2	0.7919
AT2G19130			S-locus lectin protein kinase ...		Lus10032944 [exp]	13.5	0.7755

Compare expression of checked genes

Lus10024348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.