Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024349 pacid=23174892 polypeptide=Lus10024349 locus=Lus10024349.g ID=Lus10024349.BGIv1.0 annot-version=v1.0 ATGAACTGGGTTCAAGGCATAGCGACAGTATGGGGATTGATGTTTCTGATGGGTCTGATGTGTTGCTGCCTCACCTCCAATCTTCGCCACCGCTCCGATA TCGATAACAGCGAGACCGCTAGCTGTGCTTGTGATGGTGGCTATGCTGCTGGGAGCACATGCACGCTGAGATGGGATGCTTCAGTTCAAAACCGGCAAGG ACCACCGCCATCACTAATGGACGGAAACACAGGCGTCATCACCATTCCGCTCATTAAAGAGGCGGCGGTACCGTTTTTTATTCGAGTGGCGGCGCAGGAT GCGGTGGCGGAGGCGGGCATGGAGGCTGTCATGGAGGTGGTGGATGCGGCGGGGGTGGATGTGGAGGCGGAGGTGGTGGCGGGTGTCAATAAACTTCCAA TTGATTTACTAGCTTTTCTGAGGAGGTAG
AA sequence Show only first row Show all	>Lus10024349 pacid=23174892 polypeptide=Lus10024349 locus=Lus10024349.g ID=Lus10024349.BGIv1.0 annot-version=v1.0 MNWVQGIATVWGLMFLMGLMCCCLTSNLRHRSDIDNSETASCACDGGYAAGSTCTLRWDASVQNRQGPPPSLMDGNTGVITIPLIKEAAVPFFIRVAAQD AVAEAGMEAVMEVVDAAGVDVEAEVVAGVNKLPIDLLAFLRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024349 [exp]	0	1
AT2G03350			Protein of unknown function, D...		Lus10036804 [exp]	2.0	0.9822
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Lus10033227 [exp]	2.4	0.9816
AT1G64650			Major facilitator superfamily ...		Lus10000336 [exp]	2.8	0.9817
AT4G09600		GASA3	GAST1 protein homolog 3 (.1)		Lus10014262 [exp]	3.6	0.9571
AT5G20950			Glycosyl hydrolase family prot...		Lus10043457 [exp]	4.9	0.9778
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10027679 [exp]	5.7	0.9541
AT3G24450			Heavy metal transport/detoxifi...		Lus10017730 [exp]	5.9	0.9654
AT5G14020			Endosomal targeting BRO1-like ...		Lus10031997 [exp]	6.3	0.9725
AT1G11545		XTH8	xyloglucan endotransglucosylas...		Lus10018365 [exp]	8.9	0.9594
AT5G03960		IQD12	IQ-domain 12 (.1)		Lus10018031 [exp]	9.0	0.9597

Compare expression of checked genes

Lus10024349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.