Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53900 375 / 4e-128 UPP, PYRR PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) AT2G37770 324 / 1e-107 ChlAKR, AKR4C9 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT2G37790 304 / 5e-100 AKR4C10 Aldo-keto reductase family 4 member C10, NAD(P)-linked oxidoreductase superfamily protein (.1) AT3G53880 300 / 2e-98 AKR4C11 Aldo-keto reductase family 4 member C11, NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G37760 277 / 8e-90 AKR4C8 Aldo-keto reductase family 4 member C8, NAD(P)-linked oxidoreductase superfamily protein AT5G01670 172 / 3e-49 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT1G59950 171 / 6e-49 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G59960 169 / 5e-48 NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G21260 167 / 1e-47 NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G21250 166 / 7e-47 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012654 [exp] 464 / 2e-160 AT3G53900 367 / 1e-125 PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) Lus10010885 [exp] 322 / 1e-106 AT2G37770 502 / 0.0 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10024354 [exp] 313 / 2e-100 AT2G37770 467 / 2e-163 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10010884 [exp] 305 / 2e-100 AT2G37770 484 / 5e-174 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10021491 [exp] 300 / 8e-99 AT2G37770 464 / 2e-166 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10024353 [exp] 288 / 9e-94 AT2G37770 491 / 1e-176 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10012652 [exp] 288 / 2e-92 AT2G37770 441 / 4e-155 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10010720 [exp] 176 / 2e-50 AT1G59960 410 / 2e-144 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10029208 [exp] 175 / 4e-50 AT1G59960 406 / 7e-143 NAD(P)-linked oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G091000 [exp] 436 / 8e-152 AT3G53900 379 / 7e-133 PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) Potri.016G102300 [exp] 409 / 4e-141 AT2G37770 398 / 5e-140 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.016G102100 [exp] 318 / 2e-105 AT2G37770 400 / 5e-141 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.016G102032 [exp] 311 / 1e-102 AT2G37770 424 / 2e-150 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.006G090600 [exp] 301 / 7e-99 AT2G37770 503 / 0.0 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.017G070600 [exp] 289 / 5e-94 AT2G37770 438 / 6e-156 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.005G097000 [exp] 183 / 3e-53 AT1G59960 405 / 2e-142 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G193100 [exp] 181 / 1e-52 AT1G59960 420 / 3e-148 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G144600 [exp] 180 / 9e-52 AT2G37770 251 / 1e-81 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.001G125400 [exp] 174 / 3e-50 AT5G62420 445 / 2e-158 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family CL0533 [flax] [poplar] PRTase-like PF00156 [flax] [poplar] Pribosyltran Phosphoribosyl transferase domain
Representative CDS sequence Show only first row Show all	>Lus10024350 pacid=23174979 polypeptide=Lus10024350 locus=Lus10024350.g ID=Lus10024350.BGIv1.0 annot-version=v1.0 ATGGCCGGCGCTGGAAATCAACACGGACCTTTGTATTTTGATCTCCACACAGGTGCGAAGATGCCGTCGATCGGGCTCGGAACATGGAAAGCTCCACCTG GTGACGTCGGGGAAGCTGTCAAATCCGCCGTCAAGGTAGGGAAAGCACTGAATGAGCTATATTCCTCTGGAGTGGTTCGGCGCAGTGAGATGTTCATTAC ATCTAAACTATGGTGCAGTGATCAGGCTCCTGAAGATGTCCCAAAGGCACTCGCCAAGAGCTTACAAGATCTACAGCTGGACTACATTGATCTGTACCTG ATCCACTGGCCGTTCCGGACGAAGCGAGGGTCCAGAGGGTTTGATCCTGAAGTCATGGCTCCCTTAACCCTCCCGGAGACATGGGCTGCCATGGAAGTCC TGCAAGCCTCAGGTCAAGCACGTGCTATCGGAGTCAGCAACTTCTCGACCAAGAAGCTGAAAGACCTCGTGAAGTATGCGAAAGTGCGGCCAGCTGTCAA CCAGGTGGAATGCCATCCCGTCTGGCAGCAGGCCCCGCTTCACGAGTTCTGCAAATCGGCTGGCATCCATGTCTCGAAGAACATTCAATCCCAAAATTTG CAGGCCTATTCTCCGTTGGGGTCTCCAGGGTCTTGGGTTAAGGGGGAGATCCTAAAAGAACCGATACTGATCGAAATTGCGGAGAAGCTGAAGAAATCGC CAGCTCAGGTTGCGCTTCGGTGGGGGATTCAAAGTGGACACAGTGTGCTTCCGAAGAGTGTCAACGAGTCGAGGCTGAAGGAGAATTTAAGCTTGTTCGA TTGGTGCATTCCTCCAGAGTTGTTCACCAAATTTTCAAAAATCCATCAGATGTCCTGTAACAGTCCTTCGCATCGCAGCTTTGTTACCGTCAAGTCTCAC ATGGCTACTGAGGAGAAATCCGTATCTAAGGGCAGGATGCTTGTCTTTGTGCCTCCACATCCGTTGATCAAGCACTGGGTTTCTGTTTTGAGAAACGAGC AAACTCCTTGGCCAGTTTTTCGAAATGCCATGGCTGAACTAGGAAGGCTGCTTTTATATGAAGCTTCCCGAGATTGGCTGCCTACTGTTTCCGGGGAGAT TCAGTCACCTATGGGACTTGCCTCAGTTGAATTTATTGATCCCCGAGAACCAGTGGCGGTTATTCCGATTTTGAGAGCTGGTCTCGCCCTGGCCGAGCAT GCATCTTCTATCTTGCCAGCAATGAAAACGTACCATCTAGGGCTAAGCAGAGATGAAGAGACTCTTCAACCAACTGTATATCTAAACAAGTTGCCTGAGA AGTTTCCGGAAGGATCTCGCGTGTTTGTGGTAGACCCTATGCTGGCAACAGGTGGAACTATAGTAGCAGCGATTGAGCAAGTTAAGAATAGGGGAGTTGA AAACAACCAAATCAAAGTGATTTCAGCTGTGGCTGCGCCTCCAGCTCTACAAAAGCTCAGTGAAAATTTCCCTGGGCTCCACGTATACACTGGAATCATT GATCCCAGCGTCAACGAGAAAGGGTTTATTATCCCTGGACTTGGAGATGCAGGGGATCGAAGTTTTGGTACAGAATAA
AA sequence Show only first row Show all	>Lus10024350 pacid=23174979 polypeptide=Lus10024350 locus=Lus10024350.g ID=Lus10024350.BGIv1.0 annot-version=v1.0 MAGAGNQHGPLYFDLHTGAKMPSIGLGTWKAPPGDVGEAVKSAVKVGKALNELYSSGVVRRSEMFITSKLWCSDQAPEDVPKALAKSLQDLQLDYIDLYL IHWPFRTKRGSRGFDPEVMAPLTLPETWAAMEVLQASGQARAIGVSNFSTKKLKDLVKYAKVRPAVNQVECHPVWQQAPLHEFCKSAGIHVSKNIQSQNL QAYSPLGSPGSWVKGEILKEPILIEIAEKLKKSPAQVALRWGIQSGHSVLPKSVNESRLKENLSLFDWCIPPELFTKFSKIHQMSCNSPSHRSFVTVKSH MATEEKSVSKGRMLVFVPPHPLIKHWVSVLRNEQTPWPVFRNAMAELGRLLLYEASRDWLPTVSGEIQSPMGLASVEFIDPREPVAVIPILRAGLALAEH ASSILPAMKTYHLGLSRDEETLQPTVYLNKLPEKFPEGSRVFVVDPMLATGGTIVAAIEQVKNRGVENNQIKVISAVAAPPALQKLSENFPGLHVYTGII DPSVNEKGFIIPGLGDAGDRSFGTE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Lus10024350 [exp]	0	1
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10014717 [exp]	1.4	0.9009
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Lus10017507 [exp]	1.7	0.8847
AT1G53520			Chalcone-flavanone isomerase f...		Lus10026174 [exp]	3.5	0.8856
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10005244 [exp]	5.7	0.8646
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10037428 [exp]	5.7	0.8560
AT5G14620		DMT7, DRM2	domains rearranged methyltrans...		Lus10014552 [exp]	6.2	0.8540
AT1G75590			SAUR-like auxin-responsive pro...		Lus10007552 [exp]	6.9	0.8274
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10038305 [exp]	7.7	0.8685
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10025355 [exp]	8.4	0.8567
AT2G44830			Protein kinase superfamily pro...		Lus10042911 [exp]	9.5	0.8652

Compare expression of checked genes

Lus10024350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.