Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02050 223 / 1e-72 Mitochondrial glycoprotein family protein (.1) AT3G55605 180 / 4e-56 Mitochondrial glycoprotein family protein (.1) AT2G39795 173 / 2e-53 Mitochondrial glycoprotein family protein (.1) AT5G05990 172 / 4e-53 Mitochondrial glycoprotein family protein (.1) AT2G39790 115 / 4e-31 Mitochondrial glycoprotein family protein (.1) AT1G15870 99 / 1e-24 Mitochondrial glycoprotein family protein (.1) AT1G80720 89 / 2e-21 Mitochondrial glycoprotein family protein (.1) AT4G31930 82 / 2e-18 Mitochondrial glycoprotein family protein (.1) AT4G32605 62 / 2e-11 Mitochondrial glycoprotein family protein (.1) AT2G46190 49 / 8e-07 Mitochondrial glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012653 [exp] 282 / 2e-97 AT5G02050 201 / 2e-65 Mitochondrial glycoprotein family protein (.1) Lus10001015 [exp] 190 / 6e-60 AT3G55605 232 / 1e-76 Mitochondrial glycoprotein family protein (.1) Lus10030157 [exp] 189 / 1e-59 AT3G55605 236 / 6e-78 Mitochondrial glycoprotein family protein (.1) Lus10001017 [exp] 169 / 2e-52 AT3G55605 199 / 2e-64 Mitochondrial glycoprotein family protein (.1) Lus10024352 [exp] 112 / 2e-30 AT5G02050 78 / 3e-17 Mitochondrial glycoprotein family protein (.1) Lus10026060 [exp] 104 / 9e-27 AT1G15870 263 / 4e-89 Mitochondrial glycoprotein family protein (.1) Lus10017126 [exp] 98 / 2e-24 AT4G31930 240 / 3e-80 Mitochondrial glycoprotein family protein (.1) Lus10018327 [exp] 92 / 2e-22 AT4G31930 243 / 2e-81 Mitochondrial glycoprotein family protein (.1) Lus10012652 [exp] 82 / 2e-17 AT2G37770 441 / 4e-155 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G090700 [exp] 279 / 5e-95 AT5G02050 228 / 9e-75 Mitochondrial glycoprotein family protein (.1) Potri.016G102200 [exp] 258 / 5e-87 AT5G02050 216 / 4e-70 Mitochondrial glycoprotein family protein (.1) Potri.010G198600 [exp] 198 / 4e-63 AT2G39795 222 / 1e-72 Mitochondrial glycoprotein family protein (.1) Potri.010G198500 [exp] 194 / 1e-61 AT3G55605 210 / 1e-67 Mitochondrial glycoprotein family protein (.1) Potri.004G049600 [exp] 144 / 6e-42 AT5G02050 96 / 4e-23 Mitochondrial glycoprotein family protein (.1) Potri.001G047600 [exp] 98 / 2e-24 AT1G15870 256 / 2e-86 Mitochondrial glycoprotein family protein (.1) Potri.018G021600 [exp] 96 / 2e-23 AT4G31930 259 / 1e-87 Mitochondrial glycoprotein family protein (.1) Potri.010G244500 [exp] 62 / 2e-11 AT4G32605 242 / 3e-81 Mitochondrial glycoprotein family protein (.1) Potri.008G015600 [exp] 57 / 2e-09 AT4G32605 262 / 2e-88 Mitochondrial glycoprotein family protein (.1) Potri.006G046350 [exp] 52 / 4e-08 AT2G41600 210 / 2e-69 Mitochondrial glycoprotein family protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02330 [flax] [poplar] MAM33 Mitochondrial glycoprotein
Representative CDS sequence Show only first row Show all	>Lus10024351 pacid=23174934 polypeptide=Lus10024351 locus=Lus10024351.g ID=Lus10024351.BGIv1.0 annot-version=v1.0 ATGGCCTTTGCATCCATGATCCGCAGAGCTTCTTCAGCTGTCCTTCCTCGCGCAATGAGAGCCTCCGGAACCTCAAGAACCTTCCGCACCGCCGTCTTCA CCGTTCTCGCCTCCGGAAAGCCGAGCCTTGCTCAAGACATCGCTCGCCGCAGCTTCCTTCCCCTTTCCCGATTCTTCACTTCCGACGTCGCAAGTAAACG AGCCGAGGAGAATCTGGTTCGCGTGCTCGATACTGAAATTGATTGTGCCGAGGAGCCTAAGGATTTCGAGGTTCCTGACGGGTTCCCTTTCGAAATCGAA GATACAGAAGGGGATAGGACGATATTCCTCACAAGGAAATTTGAGGACCAAACAATCAAAGTTGAAGTTGATATGCTTAACGTTGAGGAGGAGGGAGATA CTGAAGATGACAATGAAGGTGAGGATGAAGAAGCCAATGACTCGTCAAACATCCCCATGGTTGTCACAATCTCCAAAGGAAATGGCCAGGTGCTAGAGTT TGGCATCACTGCTTTCCCTGATGAGATAACCATTGATAGCCTGTCTATTAAGAATCAGTCGAGTTCTGAAGATGAACACCTGCCCTATGAAGGTCCTGAT TTCAGTGATTTGGATGAGAACTTGCAGAAGGCTTTCCACAAGTATTTGGAGATCAGAGGGATCAAGCCAAGTACCACGAATTTCTTGCTGGAGTACATGA CCAACAAGGATAACAGAGAGTATCTGAATTGGTTGAACAACCTCAAGAAGTTTGTCGAGAAGTAG
AA sequence Show only first row Show all	>Lus10024351 pacid=23174934 polypeptide=Lus10024351 locus=Lus10024351.g ID=Lus10024351.BGIv1.0 annot-version=v1.0 MAFASMIRRASSAVLPRAMRASGTSRTFRTAVFTVLASGKPSLAQDIARRSFLPLSRFFTSDVASKRAEENLVRVLDTEIDCAEEPKDFEVPDGFPFEIE DTEGDRTIFLTRKFEDQTIKVEVDMLNVEEEGDTEDDNEGEDEEANDSSNIPMVVTISKGNGQVLEFGITAFPDEITIDSLSIKNQSSSEDEHLPYEGPD FSDLDENLQKAFHKYLEIRGIKPSTTNFLLEYMTNKDNREYLNWLNNLKKFVEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02050			Mitochondrial glycoprotein fam...		Lus10024351 [exp]	0	1
AT5G40770		ATPHB3	prohibitin 3 (.1)		Lus10014604 [exp]	6.3	0.9031
AT3G16780			Ribosomal protein L19e family ...		Lus10038418 [exp]	8.8	0.8596
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10031021 [exp]	9.6	0.9197
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10010430 [exp]	11.5	0.9006
AT3G09630			Ribosomal protein L4/L1 family...		Lus10019904 [exp]	13.3	0.9057
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10023438 [exp]	15.7	0.8836
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10013988 [exp]	16.1	0.9053
AT5G40770		ATPHB3	prohibitin 3 (.1)		Lus10032072 [exp]	16.4	0.8951
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10039260 [exp]	17.8	0.9082
AT1G73240			unknown protein		Lus10026209 [exp]	18.1	0.8777

Compare expression of checked genes

Lus10024351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.