Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02050 78 / 2e-17 Mitochondrial glycoprotein family protein (.1) AT2G39795 74 / 3e-16 Mitochondrial glycoprotein family protein (.1) AT3G55605 67 / 2e-13 Mitochondrial glycoprotein family protein (.1) AT2G39790 54 / 6e-09 Mitochondrial glycoprotein family protein (.1) AT5G05990 51 / 6e-08 Mitochondrial glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012652 [exp] 159 / 4e-47 AT2G37770 441 / 4e-155 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10024351 [exp] 118 / 1e-32 AT5G02050 231 / 6e-76 Mitochondrial glycoprotein family protein (.1) Lus10012653 [exp] 74 / 2e-16 AT5G02050 201 / 2e-65 Mitochondrial glycoprotein family protein (.1) Lus10030157 [exp] 66 / 5e-13 AT3G55605 236 / 6e-78 Mitochondrial glycoprotein family protein (.1) Lus10001015 [exp] 63 / 6e-12 AT3G55605 232 / 1e-76 Mitochondrial glycoprotein family protein (.1) Lus10001017 [exp] 57 / 3e-10 AT3G55605 199 / 2e-64 Mitochondrial glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G090700 [exp] 113 / 6e-31 AT5G02050 228 / 9e-75 Mitochondrial glycoprotein family protein (.1) Potri.016G102200 [exp] 105 / 8e-28 AT5G02050 216 / 4e-70 Mitochondrial glycoprotein family protein (.1) Potri.004G049600 [exp] 86 / 3e-20 AT5G02050 96 / 4e-23 Mitochondrial glycoprotein family protein (.1) Potri.010G198600 [exp] 82 / 7e-19 AT2G39795 222 / 1e-72 Mitochondrial glycoprotein family protein (.1) Potri.010G198500 [exp] 66 / 4e-13 AT3G55605 210 / 1e-67 Mitochondrial glycoprotein family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024352 pacid=23174968 polypeptide=Lus10024352 locus=Lus10024352.g ID=Lus10024352.BGIv1.0 annot-version=v1.0 ATGGCTATCGCCCCTATGCTTCGTAGAGCTCTTCCTCTCGCCACCCGCGCTTTTAGGACGCCGCGGATTCTCCAGAGTGCCGCTATCTCAATCGTTATCC TCCATCACGGAAAGCAAAGCCTGACACCGGATATCAGTCGCGCTCTCGACTACTCCCCTCTGATTCGGCAACTCTCAACCGCCGTCGCCGAAGAACCAAG CGCCGACGAGAATCTGATCAGGGTTCTGGAGGGAGAAATCAGTGAGGCCGTAACACCAGAGGTTAACGGCATCCCGGATGATTTCCCTTTCGAAATACAA GACAACTCCGGAAGCATGAAACTTTGTCTGCATAGAACATCCAGCGATGAAGTTGTACAAATCGTAGTCGATTTGCTTACCATCAAGGATCTCGGCGAGG ATAATGTCCCTTGCAGTATTCCTCTGGTGGCAACCGTGACGAAACCAAGCGGGCAGCAGTTGGAGTTTTGCATCACGGCTTTCCCTCGCGAGTTCGAAAT CGAGAGTGTGGCGATTAGAGACTCTGATGATGGTGAAGAAGAAGAAGAAGAACTTGCTTCTTATTTCGGGCAAGTTGATTGA
AA sequence Show only first row Show all	>Lus10024352 pacid=23174968 polypeptide=Lus10024352 locus=Lus10024352.g ID=Lus10024352.BGIv1.0 annot-version=v1.0 MAIAPMLRRALPLATRAFRTPRILQSAAISIVILHHGKQSLTPDISRALDYSPLIRQLSTAVAEEPSADENLIRVLEGEISEAVTPEVNGIPDDFPFEIQ DNSGSMKLCLHRTSSDEVVQIVVDLLTIKDLGEDNVPCSIPLVATVTKPSGQQLEFCITAFPREFEIESVAIRDSDDGEEEEEELASYFGQVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02050			Mitochondrial glycoprotein fam...		Lus10024352 [exp]	0	1
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10003394 [exp]	8.5	0.7366
AT5G53020			Ribonuclease P protein subunit...		Lus10022396 [exp]	10.5	0.7590
AT4G23650		CDPK6, CPK3	Calcium dependent protein kina...		Lus10017537 [exp]	12.7	0.7554
AT3G08690		ATUBC11, UBC11	ubiquitin-conjugating enzyme 1...		Lus10007126 [exp]	14.8	0.7628
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10037056 [exp]	17.8	0.7542
AT5G52430			hydroxyproline-rich glycoprote...		Lus10017503 [exp]	18.2	0.7347
AT1G16250			Galactose oxidase/kelch repeat...		Lus10013899 [exp]	23.5	0.7429
AT1G33560		ADR1	ACTIVATED DISEASE RESISTANCE 1...		Lus10032759 [exp]	26.1	0.7288
AT3G48880			RNI-like superfamily protein (...		Lus10005745 [exp]	29.7	0.6961
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Lus10022612 [exp]	30.0	0.7374

Compare expression of checked genes

Lus10024352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.