Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37770 467 / 2e-163 ChlAKR, AKR4C9 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT2G37790 455 / 5e-159 AKR4C10 Aldo-keto reductase family 4 member C10, NAD(P)-linked oxidoreductase superfamily protein (.1) AT3G53880 419 / 7e-145 AKR4C11 Aldo-keto reductase family 4 member C11, NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G37760 411 / 7e-142 AKR4C8 Aldo-keto reductase family 4 member C8, NAD(P)-linked oxidoreductase superfamily protein AT5G01670 241 / 2e-75 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT5G62420 238 / 4e-74 NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G21250 220 / 2e-67 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT2G21260 214 / 3e-65 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G59960 210 / 2e-63 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G59950 195 / 1e-57 NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010884 [exp] 561 / 0 AT2G37770 484 / 5e-174 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10010885 [exp] 509 / 3e-180 AT2G37770 502 / 0.0 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10024353 [exp] 438 / 4e-152 AT2G37770 491 / 1e-176 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10021491 [exp] 434 / 6e-151 AT2G37770 464 / 2e-166 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10012652 [exp] 416 / 6e-142 AT2G37770 441 / 4e-155 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10024350 [exp] 346 / 5e-113 AT3G53900 374 / 9e-128 PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) Lus10027216 [exp] 254 / 2e-80 AT5G62420 429 / 2e-152 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10029208 [exp] 248 / 1e-77 AT1G59960 406 / 7e-143 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10010720 [exp] 247 / 2e-77 AT1G59960 410 / 2e-144 NAD(P)-linked oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G102100 [exp] 474 / 2e-166 AT2G37770 400 / 5e-141 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.016G102032 [exp] 469 / 2e-164 AT2G37770 424 / 2e-150 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.006G090600 [exp] 436 / 3e-151 AT2G37770 503 / 0.0 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.017G070600 [exp] 435 / 7e-151 AT2G37770 438 / 6e-156 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.016G102300 [exp] 382 / 3e-130 AT2G37770 398 / 5e-140 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.001G125400 [exp] 245 / 5e-77 AT5G62420 445 / 2e-158 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G097000 [exp] 242 / 1e-75 AT1G59960 405 / 2e-142 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G144600 [exp] 242 / 3e-75 AT2G37770 251 / 1e-81 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.008G193100 [exp] 238 / 8e-74 AT1G59960 420 / 3e-148 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.010G097800 [exp] 238 / 9e-74 AT2G37770 250 / 3e-81 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Lus10024354 pacid=23175039 polypeptide=Lus10024354 locus=Lus10024354.g ID=Lus10024354.BGIv1.0 annot-version=v1.0 ATGGCGCAGGCTATCTGCTTTTTCGAGCTGAACACCGGAGCTCAGATTCCCTCGATCGGGCTCGGGACTTGGCAAGCTGCTCCTGGCGTCGTCGGCGATG CCGTCACCACTGCCATCAAGGTTGGTTACAGACACATCGATTGTGCTCAGGTCTATGGTAATGAGAAAGAGATTGGTTCTGCGCTTAAGAAACTTTTTCA TGACGGAGTTGTTAAGCGTGAAGAGCTGTGGATTACTTCTAAACTTTGGTGTAAGGATCATGCTCCTGAAGATGTACCAGATGCATTAGATAGGACTTTG AGTGACTTGCAGCTTGACTATGTGGATCTATATCTGATCCACTGGCCCGTGAAGATGAAGAAAGGCTCCGTAGGTTTCAAGCCAGAGAACTTCGAAATCC CAGACATTCCCGCTACATGGAAGGCAATGGAGGCCTTGCATGATTCAGGCAAGGCCAAAGCAATTGGAGTCAGCAATTTCTCTTCGAAGAAGCTGGCGGA TTTGCTAGCTATAGCTCGTATCCCCCCTGCTGTTAACCAAGTTGAATGCCATCCTGTATGGCAGCAGCCAAACCTCCACGACTTCTGCAACTCCAAGGGT GTTCATCTCTCCGGTTATTCCCCACTGGGGTCTCCTGGTACGGGAAGCATCAACACCGAGGTGCTCAAGCATCCGATTCTCACTTCAGTTGCAGAGGAAT TAGGTAAATCACCTGCCCAAGTCGCCCTGCGATGGGGGATACAAACCGGGCACAGTGTTCTTCCCAAAAGCACAAATGAGGCGAGGATCAAGGAGAACTT TGATGTTCAGGACTGGTCTATCCCTGACAACTTGCTTACCGAGTTATCTGAAATTGAGCAGCTCTTTGAAGAGGGTGTAGTGAAGCGTGAGGATTTGTTC GTCACTTCAAAGCTCTGGTGCAATGCGCATCATCCAGAAGATGTGCCAGGAGCACTAGAAAAAACTTTGGCAGAGCTACAGCTTGATTATGTTGATCTCT ATCTTATTCACTGGCCGGTCGCAATGAAGAGAGGCGCAGAGGAATTTCTCTCAGAGAACCTCGCTCAGCCAGACATCCCAAGCACATGGCGAGCAATGGA AGCGCTTTACGATTCGGGAAAGGCTCGTGCTATCGGTGTGAGTAACTTCTCCGTGAAGAAGCTGGGAGATTTGTTGGAGGTGGCTCGGGTGACTCCTGCT GTGAATCAGGTGGAATGTCATCCAGTATGGCAGCAGCCCAAACTCCACACCTTCTGTCAGTCCAAGGGCATCCACCTATCAGGATACTCTCCACTGGGAT CTCCTGGAACCACATGGATCAAAGGTGATGTCCTCAAGAATCCAATTCTGACCACGGTTACGGAAAAGATGGGTAAAACTCCGGCACAGGTGGCCCTCCG CTGGGGACTGCAAATGGGTCACAGTGTGCTACCAAAGAGTACCAATGAAACAAGGATCAAGGAGAATATACAAGTCCACGGCTGGTCTATCCCTGCCGAC TTGTTTGCAAAATTTAGTGAAACCGAACAGGAAAGGCTTGTGAAGGGAAGTGGATTCGTTCACGAGACTTACGGTGGATACAGGAGCCTCGAGGAATTGT GGGATGGCGAACTCGGAATGAACAGCTGA
AA sequence Show only first row Show all	>Lus10024354 pacid=23175039 polypeptide=Lus10024354 locus=Lus10024354.g ID=Lus10024354.BGIv1.0 annot-version=v1.0 MAQAICFFELNTGAQIPSIGLGTWQAAPGVVGDAVTTAIKVGYRHIDCAQVYGNEKEIGSALKKLFHDGVVKREELWITSKLWCKDHAPEDVPDALDRTL SDLQLDYVDLYLIHWPVKMKKGSVGFKPENFEIPDIPATWKAMEALHDSGKAKAIGVSNFSSKKLADLLAIARIPPAVNQVECHPVWQQPNLHDFCNSKG VHLSGYSPLGSPGTGSINTEVLKHPILTSVAEELGKSPAQVALRWGIQTGHSVLPKSTNEARIKENFDVQDWSIPDNLLTELSEIEQLFEEGVVKREDLF VTSKLWCNAHHPEDVPGALEKTLAELQLDYVDLYLIHWPVAMKRGAEEFLSENLAQPDIPSTWRAMEALYDSGKARAIGVSNFSVKKLGDLLEVARVTPA VNQVECHPVWQQPKLHTFCQSKGIHLSGYSPLGSPGTTWIKGDVLKNPILTTVTEKMGKTPAQVALRWGLQMGHSVLPKSTNETRIKENIQVHGWSIPAD LFAKFSETEQERLVKGSGFVHETYGGYRSLEELWDGELGMNS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10024354 [exp]	0	1
AT5G45020			Glutathione S-transferase fami...		Lus10026012 [exp]	4.0	0.9490
AT1G03940			HXXXD-type acyl-transferase fa...		Lus10039745 [exp]	8.1	0.9407
AT5G12340			unknown protein		Lus10036031 [exp]	15.0	0.9387
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10031235 [exp]	18.4	0.9266
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10035479 [exp]	22.0	0.9376
AT5G47550			Cystatin/monellin superfamily ...		Lus10039104 [exp]	22.0	0.9218
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10011958 [exp]	23.8	0.9122
					Lus10009731 [exp]	24.9	0.9339
					Lus10027919 [exp]	25.2	0.9393
AT5G25930			Protein kinase family protein ...		Lus10034978 [exp]	28.0	0.9221

Compare expression of checked genes

Lus10024354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.