Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53850 149 / 2e-47 Uncharacterised protein family (UPF0497) (.1) AT5G02060 144 / 1e-45 Uncharacterised protein family (UPF0497) (.1) AT3G23200 123 / 3e-37 Uncharacterised protein family (UPF0497) (.1) AT2G28370 84 / 2e-21 Uncharacterised protein family (UPF0497) (.1) AT1G49405 67 / 3e-15 Uncharacterised protein family (UPF0497) (.1) AT2G37200 62 / 3e-13 Uncharacterised protein family (UPF0497) (.1) AT4G37235 57 / 2e-11 Uncharacterised protein family (UPF0497) (.1) AT3G50810 50 / 1e-08 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010881 [exp] 174 / 1e-57 AT3G53850 143 / 2e-44 Uncharacterised protein family (UPF0497) (.1) Lus10004698 [exp] 143 / 5e-45 AT3G53850 213 / 6e-72 Uncharacterised protein family (UPF0497) (.1) Lus10040264 [exp] 139 / 4e-40 AT3G55610 486 / 1e-165 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10022188 [exp] 102 / 9e-29 AT3G23200 206 / 3e-69 Uncharacterised protein family (UPF0497) (.1) Lus10021202 [exp] 100 / 1e-25 AT1G06620 202 / 2e-60 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037399 [exp] 84 / 3e-21 AT2G28370 259 / 4e-89 Uncharacterised protein family (UPF0497) (.1) Lus10041312 [exp] 84 / 3e-21 AT2G28370 258 / 9e-89 Uncharacterised protein family (UPF0497) (.1) Lus10021469 [exp] 81 / 2e-20 AT2G28370 258 / 7e-89 Uncharacterised protein family (UPF0497) (.1) Lus10000718 [exp] 81 / 3e-20 AT2G28370 254 / 2e-87 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G090400 [exp] 160 / 7e-52 AT3G53850 193 / 5e-64 Uncharacterised protein family (UPF0497) (.1) Potri.010G198700 [exp] 142 / 1e-44 AT3G53850 206 / 5e-69 Uncharacterised protein family (UPF0497) (.1) Potri.010G073000 [exp] 106 / 1e-30 AT3G23200 182 / 7e-60 Uncharacterised protein family (UPF0497) (.1) Potri.008G165500 [exp] 104 / 6e-30 AT3G23200 174 / 1e-56 Uncharacterised protein family (UPF0497) (.1) Potri.009G014600 [exp] 78 / 3e-19 AT2G28370 256 / 2e-88 Uncharacterised protein family (UPF0497) (.1) Potri.004G211400 [exp] 78 / 3e-19 AT2G28370 221 / 2e-74 Uncharacterised protein family (UPF0497) (.1) Potri.009G110200 [exp] 72 / 3e-17 AT3G50810 165 / 5e-53 Uncharacterised protein family (UPF0497) (.1) Potri.016G090100 [exp] 72 / 6e-17 AT2G28370 216 / 3e-72 Uncharacterised protein family (UPF0497) (.1) Potri.004G149332 [exp] 70 / 3e-16 AT3G50810 145 / 3e-45 Uncharacterised protein family (UPF0497) (.1) Potri.007G033600 [exp] 49 / 4e-08 AT4G37235 133 / 1e-40 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10024355 pacid=23174969 polypeptide=Lus10024355 locus=Lus10024355.g ID=Lus10024355.BGIv1.0 annot-version=v1.0 ATGAAGGAGATGATCGGCAGTCCAGGGACAGTAAGTGGGTTGCTGCTTAGAGTAGGGCAATGTGTGTTGGCTGCTGCTTCAATCGGCGTTATGGTCTGCG CCGATGGCTTTTCTAGCTACACTGCTTTCTGCTACTTGATTGCATCGATGGGACTTCAACTTTTATGGAGCTTTGGACTTGCTTGTCTTGACATGTATGC GTTGAGGAGAAAGAGAGACCTTCAGAATCCTGTCCTTGTCAGCTTATTCGTTGTAGGCGATTGGGATTTTTTATATTATGTAGTAGTGGTGAAGTATGCT ATCTATAGTACTTCTGCCTCTGCTGTTGCTGAGTAA
AA sequence Show only first row Show all	>Lus10024355 pacid=23174969 polypeptide=Lus10024355 locus=Lus10024355.g ID=Lus10024355.BGIv1.0 annot-version=v1.0 MKEMIGSPGTVSGLLLRVGQCVLAAASIGVMVCADGFSSYTAFCYLIASMGLQLLWSFGLACLDMYALRRKRDLQNPVLVSLFVVGDWDFLYYVVVVKYA IYSTSASAVAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53850			Uncharacterised protein family...		Lus10024355 [exp]	0	1
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Lus10002430 [exp]	2.4	0.9115
AT2G28560		ATRAD51B, RAD51...	DNA repair (Rad51) family prot...		Lus10023341 [exp]	5.0	0.8979
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Lus10008710 [exp]	7.3	0.9015
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10029803 [exp]	9.6	0.9094
AT4G11030			AMP-dependent synthetase and l...		Lus10001830 [exp]	14.1	0.8819
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10025184 [exp]	16.4	0.8647
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10010509 [exp]	18.2	0.8994
AT5G38380			unknown protein		Lus10009167 [exp]	18.8	0.8226
AT5G48940			Leucine-rich repeat transmembr...		Lus10023677 [exp]	20.8	0.8910
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034846 [exp]	21.8	0.8750

Compare expression of checked genes

Lus10024355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.