Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39770 607 / 0 VTC1, SOZ1, GMP1, EMB101, CYT1 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) AT3G55590 558 / 0 Glucose-1-phosphate adenylyltransferase family protein (.1) AT4G30570 470 / 1e-167 Glucose-1-phosphate adenylyltransferase family protein (.1) AT1G74910 180 / 1e-52 ADP-glucose pyrophosphorylase family protein (.1.2.3) AT2G04650 176 / 2e-51 ADP-glucose pyrophosphorylase family protein (.1) AT2G34970 50 / 2e-06 Trimeric LpxA-like enzyme (.1) AT3G02270 48 / 7e-06 Trimeric LpxA-like enzyme (.1) AT5G19485 44 / 0.0001 transferases;nucleotidyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004699 [exp] 612 / 0 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10040265 [exp] 612 / 0 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10030156 [exp] 458 / 1e-162 AT2G39770 518 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10001014 [exp] 419 / 2e-147 AT2G39770 476 / 1e-169 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10010879 [exp] 265 / 2e-89 AT2G39770 246 / 1e-82 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10032440 [exp] 166 / 1e-47 AT1G74910 747 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Lus10042942 [exp] 164 / 1e-46 AT1G74910 734 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Lus10014608 [exp] 144 / 3e-41 AT3G55590 175 / 1e-53 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10010880 [exp] 125 / 1e-33 AT2G39770 115 / 4e-30 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G090300 [exp] 612 / 0 AT2G39770 669 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.010G198800 [exp] 608 / 0 AT2G39770 685 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G060100 [exp] 605 / 0 AT2G39770 648 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G006700 [exp] 523 / 0 AT2G39770 619 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.012G075500 [exp] 185 / 8e-55 AT1G74910 717 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Potri.015G070500 [exp] 168 / 2e-48 AT1G74910 736 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Potri.005G045200 [exp] 56 / 3e-08 AT2G34970 969 / 0.0 Trimeric LpxA-like enzyme (.1) Potri.009G066400 [exp] 42 / 0.0007 AT5G19485 655 / 0.0 transferases;nucleotidyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00483 [flax] [poplar] NTP_transferase Nucleotidyl transferase CL0536 [flax] [poplar] HEXAPEP PF00132 [flax] [poplar] Hexapep Bacterial transferase hexapeptide (six repeats)
Representative CDS sequence Show only first row Show all	>Lus10024356 pacid=23174912 polypeptide=Lus10024356 locus=Lus10024356.g ID=Lus10024356.BGIv1.0 annot-version=v1.0 ATGAAGGCACTCATTCTCGTGGGAGGATTTGGAACACGTCTACGGCCTCTTACCCTCAGTGTCCCAAAGCCACTGGTTGATTTCGCCAACAAGCCCATGA TTCTGCATCAGATTGAGGCTCTCAAATCTATTGGAGTTACAGAAGTGGTGTTGGCCATAAATTACCAGCCAGAGGTAATGCTGACTTTCTTGAAAGAGTA CGAGAAAAAGCTCGAAATTACGATCACCTGCTCACAGGAGACTGAGCCACTTGGCACGGCAGGTCCCCTGGCTTTAGCTAGAGATAAGCTTCTAGATGGT TCGGGTGAGCCATTTTTTGTTCTGAACAGCGATGTTATAAGCGAGTATCCTCTGAAAGAAATGATCGCATTTCACAAGAGCCATGGAGGGGAGGCTTCCA TTATTGTAACAAAGGTGGATGAGCCATCGAAATACGGAGTGGTGGTTATGGAAGAAGCTACAGGGAAGGTAGAGAAGTTCGTTGAAAAGCCAAAGGTTTT CGTTGGGAACAAGATCAACGCGGGAATCTACCTGCTGAATCCATCCGTTCTCGACAGGATCGAACTGAGACCGACCTCGATCGAGAAAGAGGTATTCCCA AAGATAGCAAGCGAGAAGAAACTTTACGCTATGGTTCTTCCTGGGTTTTGGATGGACATAGGACAGCCGAAAGATTACATCACGGGTCTGAGACTCTACC TCGATTCACTGAGGAAGAGGTCTTCGTCGAAATTGGCCGCAGGATCTCACATTATTGGGAACGTCCTGGTGGACGACAGCGCTGAAATCGGAGAAGGATG TCTGATAGGGCCGGATGTTGCTATCGGCCCTGGATGCGTTATCGAGCCTGGGGTTCGGCTTTCGAGGTGCACAGTAATGCGAGGCGTTCGCATCAAGAAG CATGCTTGCGTTTCGAGTAGCATTGTGGGGTGGCATTCGACTGTGGGGAGGTGGGCGCGTATCGAGAACATGACGATTCTCGGCGAGGACGTTCATGTTG GTGATGAGGTTTACAGCAACGGCGGGGTTGTCCTGCCTCACAAAGAGATCAGGAATAGCATATTGAAGCCAGAGATCGTCATGTAA
AA sequence Show only first row Show all	>Lus10024356 pacid=23174912 polypeptide=Lus10024356 locus=Lus10024356.g ID=Lus10024356.BGIv1.0 annot-version=v1.0 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKSIGVTEVVLAINYQPEVMLTFLKEYEKKLEITITCSQETEPLGTAGPLALARDKLLDG SGEPFFVLNSDVISEYPLKEMIAFHKSHGGEASIIVTKVDEPSKYGVVVMEEATGKVEKFVEKPKVFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFP KIASEKKLYAMVLPGFWMDIGQPKDYITGLRLYLDSLRKRSSSKLAAGSHIIGNVLVDDSAEIGEGCLIGPDVAIGPGCVIEPGVRLSRCTVMRGVRIKK HACVSSSIVGWHSTVGRWARIENMTILGEDVHVGDEVYSNGGVVLPHKEIRNSILKPEIVM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10024356 [exp]	0	1
AT5G13420			Aldolase-type TIM barrel famil...		Lus10032613 [exp]	2.4	0.9291
AT2G31390		STH	pfkB-like carbohydrate kinase ...		Lus10009526 [exp]	7.9	0.9074
AT3G25130			unknown protein		Lus10038199 [exp]	8.5	0.8704
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020847 [exp]	9.5	0.8972
AT4G10265			Wound-responsive family protei...		Lus10018531 [exp]	9.8	0.9180
AT3G08650			ZIP metal ion transporter fami...		Lus10003243 [exp]	11.0	0.9001
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Lus10037019 [exp]	11.2	0.8828
AT4G24370			unknown protein		Lus10017369 [exp]	11.3	0.8830
AT3G55730	MYB	ATMYB109	myb domain protein 109 (.1)		Lus10040239 [exp]	13.5	0.8868
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10003384 [exp]	16.1	0.9062

Compare expression of checked genes

Lus10024356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.