Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06070 94 / 4e-23 C2H2ZnF RAB, RBE RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G37740 92 / 7e-22 C2H2ZnF ATZFP10, ZFP10 zinc-finger protein 10 (.1) AT4G17810 86 / 4e-20 C2H2ZnF ZFP12 C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G42410 80 / 8e-18 C2H2ZnF ATZFP11, ZFP11 zinc finger protein 11 (.1) AT3G23130 79 / 1e-17 C2H2ZnF FLO10, FON1, SUP SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G09290 64 / 2e-12 C2H2ZnF TAC1 telomerase activator1 (.1) AT3G53820 58 / 1e-10 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G43540 55 / 2e-09 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G24625 54 / 2e-08 C2H2ZnF ZFP7 zinc finger protein 7 (.1) AT1G80730 53 / 4e-08 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010871 [exp] 379 / 1e-133 AT2G37740 103 / 9e-26 zinc-finger protein 10 (.1) Lus10021490 [exp] 146 / 2e-42 AT2G37740 103 / 1e-25 zinc-finger protein 10 (.1) Lus10004705 [exp] 98 / 2e-24 AT2G37740 100 / 1e-25 zinc-finger protein 10 (.1) Lus10040083 [exp] 85 / 2e-19 AT4G17810 123 / 8e-35 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10030967 [exp] 85 / 2e-19 AT4G17810 112 / 1e-30 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10022206 [exp] 84 / 4e-19 AT3G23130 100 / 1e-25 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10021215 [exp] 85 / 1e-18 AT3G23130 102 / 1e-25 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10000481 [exp] 75 / 6e-16 AT4G17810 100 / 8e-26 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10004578 [exp] 71 / 1e-14 AT4G17810 95 / 6e-24 C2H2 and C2HC zinc fingers superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G089600 [exp] 141 / 3e-40 AT2G37740 102 / 2e-25 zinc-finger protein 10 (.1) Potri.016G101400 [exp] 137 / 6e-39 AT2G37740 108 / 3e-27 zinc-finger protein 10 (.1) Potri.008G059000 [exp] 113 / 1e-29 AT5G06070 99 / 2e-24 RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G199800 [exp] 107 / 1e-27 AT5G06070 100 / 4e-25 RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.001G142900 [exp] 92 / 5e-22 AT4G17810 135 / 1e-39 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.003G091200 [exp] 91 / 6e-22 AT4G17810 140 / 2e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G163900 [exp] 85 / 9e-20 AT3G23130 119 / 1e-33 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.002G041700 [exp] 79 / 9e-18 AT2G42410 105 / 3e-28 zinc finger protein 11 (.1) Potri.005G221400 [exp] 74 / 9e-16 AT2G42410 97 / 4e-25 zinc finger protein 11 (.1) Potri.016G101300 [exp] 68 / 5e-14 AT3G53820 92 / 2e-24 C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024362 pacid=23174920 polypeptide=Lus10024362 locus=Lus10024362.g ID=Lus10024362.BGIv1.0 annot-version=v1.0 ATGGAGCCGCCGCCGCCACAGTATTGGATGTGGAACGGAACTACTAACAACAGCAAGAGCCTCCAACCACTGGCTCCACCACCCAATCCTTTGTGTTCTT CCTACGAAGAATACTCTTCGTGGGAAGAACAGGCGTTTGCAGAAGATGCTGCTGGGCCCCACGGGGGCTGCGTGTGGCCTCCAAGATCTTACTCCTGCAC CTTTTGCAGACGTGAATTCAGATCAGCTCAAGCCCTGGGTGGCCACATGAATGTCCACAGGAGGGACCGTGCTCGACTCAAACAGTCTCCCATCCATCCC ATGGAAATTCCAATTCAATCCTCCTTGCCCACATCACCACCACCATCTCTGAGTTACCATTTCTTAGATAATCCTTACAAGCCGCCGCCAGATCTACCAA CCTCTAATAACCCTAATAGGGTTTCCACCGACAACAACTGCTCTGAGAAGTCTTTCTTTCCTTGGGAAGAGGAAAGAATAAAAAGAAAGAGGCCTCCTGA TCTGCCACGTAGATCCAACGAAGAGGATGAAATGACCAGCTTGAATTTGGTGCTCCGGCAAAGCAGTCAATCAACGGTTTCATCGGAAGAGGATGAGGTG GCGATGGGAAGAGGGAAGAGAAGAAGAATTGACGATACGGCGTCGTTGAGCTTACCCTTCATGCTTCATGAGATCCGCAACGATAATAAGAATAATAGTA ATAAGAAGAATAGCGTCGGCGGTTGTGCGAGGGAGGAGTTGGATCTGGAGCTCCGACTTGGATCAGATCGACCTCAGGTGAAAAGCATTTGA
AA sequence Show only first row Show all	>Lus10024362 pacid=23174920 polypeptide=Lus10024362 locus=Lus10024362.g ID=Lus10024362.BGIv1.0 annot-version=v1.0 MEPPPPQYWMWNGTTNNSKSLQPLAPPPNPLCSSYEEYSSWEEQAFAEDAAGPHGGCVWPPRSYSCTFCRREFRSAQALGGHMNVHRRDRARLKQSPIHP MEIPIQSSLPTSPPPSLSYHFLDNPYKPPPDLPTSNNPNRVSTDNNCSEKSFFPWEEERIKRKRPPDLPRRSNEEDEMTSLNLVLRQSSQSTVSSEEDEV AMGRGKRRRIDDTASLSLPFMLHEIRNDNKNNSNKKNSVGGCAREELDLELRLGSDRPQVKSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10024362 [exp]	0	1
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10007305 [exp]	1.0	0.9668
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10030966 [exp]	1.4	0.9611
AT3G06240			F-box family protein (.1)		Lus10001105 [exp]	3.9	0.9594
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10012548 [exp]	4.5	0.9539
AT5G48630			Cyclin family protein (.1.2)		Lus10003151 [exp]	4.6	0.9513
AT5G65495			unknown protein		Lus10002656 [exp]	5.7	0.9487
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	6.6	0.9547
AT5G41810			unknown protein		Lus10001907 [exp]	6.9	0.9536
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10003810 [exp]	7.1	0.9475
AT1G29760			Putative adipose-regulatory pr...		Lus10034735 [exp]	7.2	0.9364

Compare expression of checked genes

Lus10024362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.