Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53820 66 / 7e-14 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G09290 66 / 2e-13 C2H2ZnF TAC1 telomerase activator1 (.1) AT2G37740 66 / 5e-13 C2H2ZnF ATZFP10, ZFP10 zinc-finger protein 10 (.1) AT3G23130 60 / 3e-11 C2H2ZnF FLO10, FON1, SUP SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G42410 60 / 4e-11 C2H2ZnF ATZFP11, ZFP11 zinc finger protein 11 (.1) AT5G43540 57 / 8e-11 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G06070 58 / 2e-10 C2H2ZnF RAB, RBE RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1) AT4G17810 56 / 1e-09 C2H2ZnF ZFP12 C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G23140 49 / 2e-07 C2H2ZnF URO UPRIGHT ROSETTE, C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G27880 48 / 1e-06 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010870 [exp] 255 / 2e-87 AT3G09290 65 / 2e-13 telomerase activator1 (.1) Lus10040767 [exp] 67 / 2e-13 AT3G09290 71 / 5e-15 telomerase activator1 (.1) Lus10021213 [exp] 64 / 1e-12 AT3G09290 73 / 2e-16 telomerase activator1 (.1) Lus10021490 [exp] 65 / 2e-12 AT2G37740 103 / 1e-25 zinc-finger protein 10 (.1) Lus10022204 [exp] 61 / 2e-12 AT3G09290 67 / 2e-15 telomerase activator1 (.1) Lus10030967 [exp] 62 / 8e-12 AT4G17810 112 / 1e-30 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10024362 [exp] 62 / 1e-11 AT2G37740 105 / 4e-27 zinc-finger protein 10 (.1) Lus10010871 [exp] 62 / 2e-11 AT2G37740 103 / 9e-26 zinc-finger protein 10 (.1) Lus10040083 [exp] 61 / 2e-11 AT4G17810 123 / 8e-35 C2H2 and C2HC zinc fingers superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G089301 [exp] 81 / 2e-19 AT3G53820 96 / 1e-25 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.016G101300 [exp] 78 / 2e-18 AT3G53820 92 / 2e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.009G037100 [exp] 70 / 5e-15 AT3G53820 74 / 5e-17 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.002G041700 [exp] 64 / 1e-12 AT2G42410 105 / 3e-28 zinc finger protein 11 (.1) Potri.008G164100 [exp] 64 / 1e-12 AT5G43540 69 / 3e-15 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G074400 [exp] 63 / 2e-12 AT5G43540 69 / 3e-15 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.002G041600 [exp] 63 / 2e-12 AT4G17810 65 / 6e-13 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.005G221500 [exp] 62 / 3e-12 AT5G43540 61 / 6e-12 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.001G142900 [exp] 63 / 5e-12 AT4G17810 135 / 1e-39 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G199800 [exp] 63 / 5e-12 AT5G06070 100 / 4e-25 RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024363 pacid=23174997 polypeptide=Lus10024363 locus=Lus10024363.g ID=Lus10024363.BGIv1.0 annot-version=v1.0 ATGTCCCCCGGCGGCTCTTTCTTCCTGATCATGAACTTAGGCCGCGGCCAATACAATTCCGATCAGAAACCCGACACCCAAATTGTATGGAGGCAACAAC ATCAGCTGGAAAACGACGGTGATCAAGTGAGGGAAAAATCGTACACATGCGCCTTCTGCAAGAGAGGCTTCTCCAACGCACAAGCATTAGGTGGGCACAT GACCATCCACAGGAAGGATAGGGCCAAGCTTAAAGAAGCCGCTGACCATCACTACCATTTCCAAACCCTCTTGTCTTTGGACATCTCCAACAATAACAAC TCATCATCCACTTCTTCTTCTTCTTCTCCTCCTCCCCCTCCTCCGCGGTCTAAGATCGTTAGTGATAACGATGATGATCAGCCGCGGATGCAAGTACTTG ATCCGTTGTTTGTTGATATTGATCATGAAGGTTCTGGTGAGGTGCAGTTGGATCTAGAGCTGCGGTTGGGACCAGAGCCACCACCCCCGAAGGTGCAGCC AGCAGCCCCATGTAAAACATCTTCGCCATCGTCGCCATCAGGAGCAACCACCCGAAGATTCATGTGA
AA sequence Show only first row Show all	>Lus10024363 pacid=23174997 polypeptide=Lus10024363 locus=Lus10024363.g ID=Lus10024363.BGIv1.0 annot-version=v1.0 MSPGGSFFLIMNLGRGQYNSDQKPDTQIVWRQQHQLENDGDQVREKSYTCAFCKRGFSNAQALGGHMTIHRKDRAKLKEAADHHYHFQTLLSLDISNNNN SSSTSSSSSPPPPPPRSKIVSDNDDDQPRMQVLDPLFVDIDHEGSGEVQLDLELRLGPEPPPPKVQPAAPCKTSSPSSPSGATTRRFM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53820	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10024363 [exp]	0	1
AT4G30230			unknown protein		Lus10041416 [exp]	1.7	0.9397
AT5G19890			Peroxidase superfamily protein...		Lus10025535 [exp]	3.0	0.9302
AT1G01490			Heavy metal transport/detoxifi...		Lus10027523 [exp]	3.2	0.9389
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10036296 [exp]	4.9	0.9438
AT4G18360			Aldolase-type TIM barrel famil...		Lus10023302 [exp]	6.0	0.9467
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031660 [exp]	9.8	0.9397
AT5G53110			RING/U-box superfamily protein...		Lus10012628 [exp]	10.8	0.8882
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10014086 [exp]	10.8	0.9241
AT5G05550	Trihelix		sequence-specific DNA binding ...		Lus10028985 [exp]	14.8	0.9171
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Lus10004711 [exp]	15.0	0.9129

Compare expression of checked genes

Lus10024363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.