Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37730 405 / 2e-139 Protein of unknown function (DUF604) (.1) AT3G11420 325 / 1e-108 Protein of unknown function (DUF604) (.1) AT5G41460 284 / 3e-92 Protein of unknown function (DUF604) (.1) AT4G23490 276 / 4e-89 Protein of unknown function (DUF604) (.1) AT4G11350 271 / 1e-87 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT1G01570 264 / 7e-85 Protein of unknown function (DUF604) (.1) AT4G00300 256 / 5e-79 fringe-related protein (.1.2) AT4G15240 245 / 1e-77 Protein of unknown function (DUF604) (.1) AT1G07850 243 / 2e-76 Protein of unknown function (DUF604) (.1) AT1G33250 238 / 3e-74 Protein of unknown function (DUF604) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010869 [exp] 433 / 2e-154 AT2G37730 305 / 2e-101 Protein of unknown function (DUF604) (.1) Lus10002713 [exp] 338 / 5e-114 AT3G11420 460 / 5e-159 Protein of unknown function (DUF604) (.1) Lus10032293 [exp] 281 / 6e-91 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10017514 [exp] 275 / 1e-88 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10018123 [exp] 273 / 5e-88 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10036382 [exp] 270 / 1e-86 AT4G11350 580 / 0.0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10033260 [exp] 257 / 2e-83 AT1G33250 546 / 0.0 Protein of unknown function (DUF604) (.1) Lus10033262 [exp] 256 / 4e-83 AT1G33250 544 / 0.0 Protein of unknown function (DUF604) (.1) Lus10039692 [exp] 252 / 1e-80 AT1G05280 476 / 3e-166 Protein of unknown function (DUF604) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G089150 [exp] 413 / 5e-143 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 404 / 2e-139 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.010G199900 [exp] 353 / 1e-119 AT3G11420 481 / 7e-167 Protein of unknown function (DUF604) (.1) Potri.008G058900 [exp] 347 / 2e-117 AT3G11420 493 / 1e-171 Protein of unknown function (DUF604) (.1) Potri.003G131400 [exp] 280 / 1e-90 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 278 / 2e-90 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G100700 [exp] 275 / 1e-88 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.012G107800 [exp] 265 / 3e-85 AT4G23490 546 / 0.0 Protein of unknown function (DUF604) (.1) Potri.017G039600 [exp] 260 / 9e-84 AT1G05280 479 / 3e-167 Protein of unknown function (DUF604) (.1) Potri.011G147300 [exp] 262 / 1e-83 AT1G33250 648 / 0.0 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04646 [flax] [poplar] DUF604 Protein of unknown function, DUF604
Representative CDS sequence Show only first row Show all	>Lus10024364 pacid=23174895 polypeptide=Lus10024364 locus=Lus10024364.g ID=Lus10024364.BGIv1.0 annot-version=v1.0 ATGGGATTGAGCGACGTGAGGTGGTTCGTTATGGGGGACGACGACACCGTTTTCTTCGTGGAGAATTTGGTGTCGGTGCTGGGTAAGTACGACCACAACC AGATGTATTACATCGGTGGGAACTCCGAGAGCGTGGAGCAGGACGTCATTCACTCCTATGACATGGGCTACGGGGGCGGCGGGGTCGCCATCAGTTACCC TCTGGCCAAGGAGCTCGTCAAGGTGCTCGACGGATGCATCGATCGATACGCTTCGTTTTACGGCTCCGATCAGAAGGTCCAGGCTTGCATGGTCGAGATC GGCATCCCTTTAACCAAAGAGCTCGGCTTCCATCAGATGGACATAAGGGGGGATCCGTACGGGCTATTGGCGGCGCATCCGTTAGCCCCGCTGGTGTCGC TCCACCACGTGGACTATCTCCGTCCGATATTTCCGGAGACGACGTCGCAGGTAAAGGCCATTCGGAAGCTGATGGATTCCTATACGGTAGACCCGAGCAG AACTCTACAGAGGAGTTTTTGCTACGATTTGAAGCGGAATTGGACGGTGTCGGTGTCGTGGGGGTATACCGTGCAAGTGTATCCGTCTCTGGTGACTGCG AAGCGGCTGGACGCGACGATTCAGACGTTCAAGACGTGGAGGACTTGGAAGGAGTCGCCGTTCACGTTCAACACCCGACCCGTCAACGGTCAGAATAATC CGGGTGAAGAAGTACCCGTTCTATATTTCTTGGACCAGGTTCGGAGTCGGAATAAGAATAATGTTGGTCACCTTCCAGAGACTGTGACCACGTACAAGAG ACACGTGGCGGGATTTGGCGACGATAAAGTCTATAACAGAAGTGAATACAGAAGAATCACAGCCGTCGAAAATGTCCACGTCATTGCTTCTCCGATGGAT CCCAAGAGCTGGAATCTGGTTAGCCGCCTCTGTTTTTACTCTGCTTATTTTTTAAGGGCCGTACGATCATAG
AA sequence Show only first row Show all	>Lus10024364 pacid=23174895 polypeptide=Lus10024364 locus=Lus10024364.g ID=Lus10024364.BGIv1.0 annot-version=v1.0 MGLSDVRWFVMGDDDTVFFVENLVSVLGKYDHNQMYYIGGNSESVEQDVIHSYDMGYGGGGVAISYPLAKELVKVLDGCIDRYASFYGSDQKVQACMVEI GIPLTKELGFHQMDIRGDPYGLLAAHPLAPLVSLHHVDYLRPIFPETTSQVKAIRKLMDSYTVDPSRTLQRSFCYDLKRNWTVSVSWGYTVQVYPSLVTA KRLDATIQTFKTWRTWKESPFTFNTRPVNGQNNPGEEVPVLYFLDQVRSRNKNNVGHLPETVTTYKRHVAGFGDDKVYNRSEYRRITAVENVHVIASPMD PKSWNLVSRLCFYSAYFLRAVRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37730			Protein of unknown function (D...		Lus10024364 [exp]	0	1
AT2G16890			UDP-Glycosyltransferase superf...		Lus10022221 [exp]	1.0	0.8536
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Lus10025680 [exp]	5.5	0.8001
AT2G21100			Disease resistance-responsive ...		Lus10034482 [exp]	8.2	0.7846
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10002147 [exp]	12.0	0.7635
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10002486 [exp]	13.5	0.7580
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10039506 [exp]	14.1	0.7632
AT3G25882		NIMIN-2	NIM1-interacting 2 (.1)		Lus10041460 [exp]	17.5	0.7619
					Lus10039856 [exp]	17.9	0.7675
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Lus10023705 [exp]	21.1	0.7804
AT1G67330			Protein of unknown function (D...		Lus10037026 [exp]	23.1	0.7883

Compare expression of checked genes

Lus10024364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.