Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55550 649 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 543 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 535 / 0 RLK receptor lectin kinase (.1) AT4G29050 526 / 2e-179 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 524 / 2e-178 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 509 / 2e-172 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 500 / 5e-169 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59260 468 / 1e-156 Concanavalin A-like lectin protein kinase family protein (.1) AT3G08870 467 / 8e-156 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70130 462 / 1e-154 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010867 [exp] 1167 / 0 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040276 [exp] 694 / 0 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10008597 [exp] 565 / 0 AT3G53810 771 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 559 / 0 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 558 / 0 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 553 / 0 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029315 [exp] 546 / 0 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 545 / 0 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10001562 [exp] 540 / 0 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G101000 [exp] 797 / 0 AT3G55550 704 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.010G200600 [exp] 696 / 0 AT3G55550 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.008G058400 [exp] 670 / 0 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088600 [exp] 602 / 0 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 599 / 0 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 588 / 0 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.006G088400 [exp] 578 / 0 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.006G088632 [exp] 577 / 0 AT2G37710 770 / 0.0 receptor lectin kinase (.1) Potri.009G036300 [exp] 563 / 0 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035500 [exp] 553 / 0 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10024365 pacid=23174929 polypeptide=Lus10024365 locus=Lus10024365.g ID=Lus10024365.BGIv1.0 annot-version=v1.0 ATGGCCACTTTCCTAACTCTAATCATCTTCATCATCTTCTTCTTACAAACTCCTGCTTCATCTCAGCTCACCAAAGATTCAATCTTTTTCCCTGGATTCA AAGATGCAACCACAAACTTCACCTTAGCAGGAGCATCACAGATTCAACCCAACGGAATCCTCCGCCTAACCAACGACACCAACAGAGTCATGGGCCACGC ATTCTACGCCTCTCCATTCCGATTCAAAAACTCTACTCCCGACGGTAAAATCGCTTCCTTTTCCACTAATTTCGCTCTTACAATCGTCCCCGAGTATCCG AAACTCGGCGGACATGGTCTGGCATTCACAATCTCCAGCTCCAAACACCTCAAGGCTCTCCCCAGCCAGTACCTTGGCTTGTTCAATGCCACTGACCTCC TTGGAAACCTGTCCACAGCTCGGACTTTTGCAGTCGAATTCGACACGGTACAGGATTTCGAATTTGGAGATATCAACGACAACCACATTGGCATCGACAT CGATAGCTTGCGGTCCAATGCTTCCGTCTCTGCAGCATATTACCCTGATGATGATGATGATGATGGCACCAAAAAGGATCTGAATCTCAAATGTGGGAAG CCGATTCAAGTGTGGATTGATTACGATTCGGTTGGAAACCTGCTCAATGTCACTGTTTCTCCAACTTCAACCAAACCGAAACGACCAATTCTTTCCTTTC CAGTTGATCTATCTCCAGTTTTTGAAGAGTTTATGTTCGTTGGGTTCTCTGCTTCAACTGGATTGCTAGCTAGCTCACATTACATTCTCGGATGGAGCTT CAAATTAAACGGAGAATCTCAAGGATTGGATCTTTCTTCTCTTCCGTCGCTTTCCAATTCCAATAACAAATCACATAACAGCTTAACGATTGGTATATCA ATAGCATCTGCTTTGATTGCAATTTGCATTCTCTCTTTGGTATTAGTTTACCTGGTGAGGAAGAGAATAAGAAATTCTGAAGATAGGATTGAAGATTGGG AGCTGGGAATCGGACCACAGAGATACTCATACAGCGAATTGAAAAGAGCAACTCACAATTTCAGCGAGAAGGAACTTTTAGGAAGCGGCGGGTTTGGACA AGTATACAAAGGAATCATCCCGGAATCGAAAATCCAAGTCGCTGTTAAACGGATTTCCGACGAGTCAAAGCAAGGCCTCCGCGAATTCGTCTCCGAGATT GGAAGCATCGGGAAGCTCCGTCACAGGAACCTGGTTCAATTGATCGGATGGTGTCGTCGGAAAGGCGATCTCCTCTTAGTCTACGAGTATATGCCGAACG GTAGCTTGGATACTTTCCTGTTCGACGAGCCCAAGACGGTATTGAATTGGGAGCAGAGATTCAAAATCATTAAAGACGTAGCGTCGGGTTTGCTCTACTT ACACGAAGGTTATGAGCAGGTGGTGATCCACCGGGATGTGAAGGCGAGTAACGTTCTATTGGACGGCGAGATGAACGCGAAGCTGGGGGACTTCGGGCTG GCGAGACTGTACGAGCGGGGATCGAATCCAGGGACAACTAGGGTTGTGGGGACGCTAGGGTATTTGGCGCCGGAGATGACGAGGACGGGGAAGGCGACGG CGGGGTCGGATGTGTATGCGCTCGGGGCGCTGTTGCTTGAGGTTGTGTGCGGGCGGCGGCCGATTGATCCGAAGGCGGCGACGGAGGAGCTAGTGTTAGT GGATGTGGTGTGGGAGAGGCTTAAAGATGGGAAGATAAGGCGGATCGTTGATCGGAGGATGAATGGGGATTACAACGAAAAGGAGGCCGCGGTGGTTTTG AAATTGGGGATCATGTGTTCGTGTCATGAGGCGGGGGCGCGGCCGACTGTGAGGGAGGTGGTTAGGTATTTGGATGGGGAGGTTGAGGTGCCGGAGAGTT ATGTTGCGGCGACGAGTGGCAGCGCCGGCAGTTGTGGCGGAGGGAGTGGGGTCACTGAAGGTTTTGATGGGTACTTGAATTCGACCGGCAACACGACGAC ATTTGGATTCATGAGTTCTACGGGGAACTCTTTTCTTGGGAACGGTAACGGGATAACCGATCTTCGGACTCTTTGTACTTCTCCACTGTAA
AA sequence Show only first row Show all	>Lus10024365 pacid=23174929 polypeptide=Lus10024365 locus=Lus10024365.g ID=Lus10024365.BGIv1.0 annot-version=v1.0 MATFLTLIIFIIFFLQTPASSQLTKDSIFFPGFKDATTNFTLAGASQIQPNGILRLTNDTNRVMGHAFYASPFRFKNSTPDGKIASFSTNFALTIVPEYP KLGGHGLAFTISSSKHLKALPSQYLGLFNATDLLGNLSTARTFAVEFDTVQDFEFGDINDNHIGIDIDSLRSNASVSAAYYPDDDDDDGTKKDLNLKCGK PIQVWIDYDSVGNLLNVTVSPTSTKPKRPILSFPVDLSPVFEEFMFVGFSASTGLLASSHYILGWSFKLNGESQGLDLSSLPSLSNSNNKSHNSLTIGIS IASALIAICILSLVLVYLVRKRIRNSEDRIEDWELGIGPQRYSYSELKRATHNFSEKELLGSGGFGQVYKGIIPESKIQVAVKRISDESKQGLREFVSEI GSIGKLRHRNLVQLIGWCRRKGDLLLVYEYMPNGSLDTFLFDEPKTVLNWEQRFKIIKDVASGLLYLHEGYEQVVIHRDVKASNVLLDGEMNAKLGDFGL ARLYERGSNPGTTRVVGTLGYLAPEMTRTGKATAGSDVYALGALLLEVVCGRRPIDPKAATEELVLVDVVWERLKDGKIRRIVDRRMNGDYNEKEAAVVL KLGIMCSCHEAGARPTVREVVRYLDGEVEVPESYVAATSGSAGSCGGGSGVTEGFDGYLNSTGNTTTFGFMSSTGNSFLGNGNGITDLRTLCTSPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55550			Concanavalin A-like lectin pro...		Lus10024365 [exp]	0	1
AT2G47510		FUM1	fumarase 1 (.1.2)		Lus10009114 [exp]	5.9	0.8142
AT5G61900		CPN1, BON1	COPINE 1, BONZAI 1, Calcium-de...		Lus10043206 [exp]	6.9	0.8220
AT3G03140			Tudor/PWWP/MBT superfamily pro...		Lus10004108 [exp]	12.1	0.8408
AT5G20730	ARF	MSG1, IAA21, BI...	MASSUGU 1, indole-3-acetic aci...		Lus10017681 [exp]	19.0	0.8028
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10024052 [exp]	23.5	0.8268
AT1G04230			Protein of unknown function (D...		Lus10039411 [exp]	29.2	0.7970
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Lus10006348 [exp]	37.8	0.7932
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10021111 [exp]	41.1	0.8087
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10034538 [exp]	51.8	0.7890
AT1G18040		CDKD1;3, AT;CDC...	cyclin-dependent kinase D1;3 (...		Lus10040530 [exp]	53.3	0.7350

Compare expression of checked genes

Lus10024365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.