Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54420 224 / 1e-73 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43610 223 / 7e-73 Chitinase family protein (.1) AT2G43620 216 / 2e-70 Chitinase family protein (.1) AT2G43590 215 / 5e-70 Chitinase family protein (.1) AT2G43580 202 / 4e-65 Chitinase family protein (.1) AT2G43570 201 / 2e-64 CHI "chitinase, putative", chitinase, putative (.1) AT1G56680 167 / 3e-51 Chitinase family protein (.1) AT3G47540 164 / 8e-51 Chitinase family protein (.1.2) AT2G43600 150 / 1e-44 Chitinase family protein (.1) AT3G12500 148 / 4e-43 PR-3, PR3, CHI-B, B-CHI, ATHCHIB PATHOGENESIS-RELATED 3, basic chitinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010863 [exp] 357 / 1e-126 AT3G54420 206 / 2e-66 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10003231 [exp] 298 / 4e-103 AT3G54420 241 / 2e-80 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10010866 [exp] 292 / 6e-101 AT3G54420 239 / 1e-79 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10024366 [exp] 286 / 2e-98 AT3G54420 226 / 2e-74 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10035618 [exp] 277 / 6e-95 AT2G43590 229 / 1e-75 Chitinase family protein (.1) Lus10010861 [exp] 277 / 6e-95 AT2G43590 263 / 6e-89 Chitinase family protein (.1) Lus10010862 [exp] 276 / 2e-94 AT2G43590 262 / 1e-88 Chitinase family protein (.1) Lus10035620 [exp] 278 / 6e-93 AT2G43590 223 / 6e-71 Chitinase family protein (.1) Lus10024368 [exp] 271 / 2e-92 AT2G43590 264 / 2e-89 Chitinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093900 [exp] 263 / 7e-89 AT3G54420 360 / 3e-126 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094100 [exp] 256 / 5e-86 AT3G54420 350 / 3e-122 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093800 [exp] 253 / 6e-85 AT3G54420 369 / 8e-130 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094000 [exp] 245 / 8e-82 AT3G54420 340 / 2e-118 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125100 [exp] 241 / 5e-80 AT3G54420 336 / 1e-116 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125000 [exp] 231 / 2e-76 AT3G54420 421 / 1e-150 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093700 [exp] 229 / 2e-75 AT3G54420 413 / 3e-147 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.004G182000 [exp] 163 / 4e-49 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141700 [exp] 159 / 9e-48 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142150 [exp] 149 / 9e-45 AT3G12500 365 / 8e-128 PATHOGENESIS-RELATED 3, basic chitinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF00182 [flax] [poplar] Glyco_hydro_19 Chitinase class I
Representative CDS sequence Show only first row Show all	>Lus10024367 pacid=23174989 polypeptide=Lus10024367 locus=Lus10024367.g ID=Lus10024367.BGIv1.0 annot-version=v1.0 ATGGAAAAACTCCTCCTCCTCCTCGCCGCCGTAGCCATGCTTGTGGTCACCACCACGACCGTGGTGGAAGGTTCTGTAGCCAACATCGTCACTCCAGAGT TCTTCAACTGCATTCGCAACCAGGCATCCAACACTTGTGTTGGAAAGACATTCTACACTCGAGAAGCCTTTCTTCAGGCCGCTGCAGCATACCCTAGCTT CGGCAATCAAGGCTCCTTGGCTACTTCCAAGCGCGAGATCGCAGCCTTCTTCGCCCATGTCGCCCAGGAAACCGGAAGCTTGTGCTACGTGGAAGAAATT AACCGCGACAGGTACTGTGATCCGAGCCCACCGTACCCATGCGCAGAAGAAAAAAGTTACTACGGGCGGGGCCCACTTCAGCTGTCGTGGAACTACAACT ACAAGGACGCCGGCAATGCAAACAACTTTAATGGCGTACAAGACCCGGATATCGTGGCTAGGGATCCAGTGATTGCATGGAAGACGGCGTTATGGTTCTG GATGACAAACGTTCGCCCCGTCTTGCTAAAAGGGTTTGGAGCCACCATCCGTAAGATTAACGGCGGGGAATGTAACGGCGGGAACCCTGCCGCCGTCCGT GTCCGGGTGAGCTACTATAACTCCTACTGCAGGAAGTTTGGGATCCCGACTGAGCGTTGTCCTGGCTGTTAA
AA sequence Show only first row Show all	>Lus10024367 pacid=23174989 polypeptide=Lus10024367 locus=Lus10024367.g ID=Lus10024367.BGIv1.0 annot-version=v1.0 MEKLLLLLAAVAMLVVTTTTVVEGSVANIVTPEFFNCIRNQASNTCVGKTFYTREAFLQAAAAYPSFGNQGSLATSKREIAAFFAHVAQETGSLCYVEEI NRDRYCDPSPPYPCAEEKSYYGRGPLQLSWNYNYKDAGNANNFNGVQDPDIVARDPVIAWKTALWFWMTNVRPVLLKGFGATIRKINGGECNGGNPAAVR VRVSYYNSYCRKFGIPTERCPGC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10024367 [exp]	0	1
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10035547 [exp]	2.4	0.7684
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Lus10034334 [exp]	5.2	0.7199
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Lus10034372 [exp]	6.3	0.7037
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10016861 [exp]	7.3	0.7238
AT1G17800		AtENODL22	early nodulin-like protein 22 ...		Lus10020984 [exp]	13.8	0.7024
AT3G13290		VCR	varicose-related (.1)		Lus10039096 [exp]	14.7	0.6787
AT5G09220		AAP2	amino acid permease 2 (.1)		Lus10027109 [exp]	20.4	0.5811
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10031759 [exp]	23.5	0.6057
AT1G29140			Pollen Ole e 1 allergen and ex...		Lus10042838 [exp]	27.9	0.6116
AT1G73050			Glucose-methanol-choline (GMC)...		Lus10034845 [exp]	29.2	0.5696

Compare expression of checked genes

Lus10024367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.