Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43610 232 / 2e-76 Chitinase family protein (.1) AT2G43590 229 / 1e-75 Chitinase family protein (.1) AT2G43620 224 / 3e-73 Chitinase family protein (.1) AT3G54420 211 / 2e-68 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43580 199 / 7e-64 Chitinase family protein (.1) AT2G43570 187 / 8e-59 CHI "chitinase, putative", chitinase, putative (.1) AT1G56680 167 / 6e-51 Chitinase family protein (.1) AT3G47540 158 / 2e-48 Chitinase family protein (.1.2) AT2G43600 149 / 3e-44 Chitinase family protein (.1) AT1G02360 137 / 2e-39 Chitinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010861 [exp] 367 / 1e-130 AT2G43590 263 / 6e-89 Chitinase family protein (.1) Lus10010862 [exp] 367 / 3e-130 AT2G43590 262 / 1e-88 Chitinase family protein (.1) Lus10003587 [exp] 332 / 8e-117 AT2G43590 270 / 1e-91 Chitinase family protein (.1) Lus10032794 [exp] 329 / 1e-115 AT2G43590 265 / 6e-90 Chitinase family protein (.1) Lus10035624 [exp] 266 / 4e-89 AT2G43590 246 / 5e-81 Chitinase family protein (.1) Lus10003227 [exp] 258 / 3e-86 AT2G43590 241 / 7e-79 Chitinase family protein (.1) Lus10024369 [exp] 253 / 1e-85 AT3G54420 230 / 6e-76 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10010866 [exp] 251 / 8e-85 AT3G54420 239 / 1e-79 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10003226 [exp] 249 / 2e-82 AT3G54420 269 / 2e-89 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093900 [exp] 244 / 2e-81 AT3G54420 360 / 3e-126 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094100 [exp] 244 / 2e-81 AT3G54420 350 / 3e-122 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093800 [exp] 242 / 1e-80 AT3G54420 369 / 8e-130 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125100 [exp] 241 / 5e-80 AT3G54420 336 / 1e-116 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094000 [exp] 237 / 2e-78 AT3G54420 340 / 2e-118 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125000 [exp] 211 / 2e-68 AT3G54420 421 / 1e-150 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093700 [exp] 206 / 2e-66 AT3G54420 413 / 3e-147 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.002G186500 [exp] 150 / 1e-44 AT1G02360 413 / 2e-147 Chitinase family protein (.1) Potri.009G141700 [exp] 146 / 1e-42 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.014G111800 [exp] 144 / 2e-42 AT4G01700 422 / 1e-150 Chitinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF00182 [flax] [poplar] Glyco_hydro_19 Chitinase class I
Representative CDS sequence Show only first row Show all	>Lus10024368 pacid=23175037 polypeptide=Lus10024368 locus=Lus10024368.g ID=Lus10024368.BGIv1.0 annot-version=v1.0 ATGGGAAAACTTCAACTTCTCATGGCCACACTGCTGGCGGTATTTCTGGCCGTCGCAGTCATCCCCACAACCGTGATGGTTGAAGCTGTTGCGGTGGGCA GCGTGGTCACTCCATCCTTCTTCAATGGCATCCTTAGCCAGGCCGGTACCGGATGCAAGGGTAAGCGGTTCTACACACGTGCCTCCTTCCTCGCTGCCGC ACGTGCTTACCCTCGCTTCGGTAACCTCGACACCAACCTCTGGTCCAAGCGCGAGATTGCTGCCTTCTTCGCCCAAGTCACCCACGAAACTGGACACTTT TGCTACGTGGAAGAAATAGCTCGTGGGACATACTGTTCGTCGTCGAGCCAATACCCATGTGCTCCGGGGAAGAAGTACTACGGCCGTGGGCCCATACAGC TGACGTGGAACTATAACTACGGCGCATGTGGCAAGGCGAACAACTTCAACGGGCTGAAGGACCCTGACATTGTGGCTAGGAACCCTACGGTTGCGTGGAA GACGGGTTTGTGGTTCTGGATGAAGAATGTTCGCCCTGTGGTGAAACGAGGGTTTGGGGCCACCATTCGTCGCATTAATGGCGGAGAATGCAACGGCGGG AGTCCTAGGGCTGTGGCCGCTCGAGTCAAGTATTATAGAGCTTACTGCAGGGCTTTTGGGATCACTCCTGGCCCCAACATCAGTTGCTAG
AA sequence Show only first row Show all	>Lus10024368 pacid=23175037 polypeptide=Lus10024368 locus=Lus10024368.g ID=Lus10024368.BGIv1.0 annot-version=v1.0 MGKLQLLMATLLAVFLAVAVIPTTVMVEAVAVGSVVTPSFFNGILSQAGTGCKGKRFYTRASFLAAARAYPRFGNLDTNLWSKREIAAFFAQVTHETGHF CYVEEIARGTYCSSSSQYPCAPGKKYYGRGPIQLTWNYNYGACGKANNFNGLKDPDIVARNPTVAWKTGLWFWMKNVRPVVKRGFGATIRRINGGECNGG SPRAVAARVKYYRAYCRAFGITPGPNISC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43590			Chitinase family protein (.1)		Lus10024368 [exp]	0	1
AT2G43590			Chitinase family protein (.1)		Lus10010861 [exp]	1.0	0.9325
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10013352 [exp]	4.5	0.8807
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10009398 [exp]	4.7	0.8997
AT3G23360			Protein phosphatase 2C family ...		Lus10011808 [exp]	7.7	0.8492
AT3G47570			Leucine-rich repeat protein ki...		Lus10010199 [exp]	10.2	0.8919
AT5G51700		ATRAR1, RPR2, P...	Required for Mla12 resistance ...		Lus10031107 [exp]	22.1	0.8707
AT2G34750			RNA polymerase I specific tran...		Lus10005693 [exp]	23.0	0.8595
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10038903 [exp]	24.7	0.8337
AT1G33670			Leucine-rich repeat (LRR) fami...		Lus10041065 [exp]	27.9	0.8611
AT2G14210	MADS	AGL44, ANR1	ARABIDOPSIS NITRATE REGULATED ...		Lus10028214 [exp]	28.1	0.8707

Compare expression of checked genes

Lus10024368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.