Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54420 230 / 6e-76 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43590 226 / 3e-74 Chitinase family protein (.1) AT2G43610 220 / 8e-72 Chitinase family protein (.1) AT2G43620 218 / 5e-71 Chitinase family protein (.1) AT2G43580 206 / 1e-66 Chitinase family protein (.1) AT2G43570 178 / 1e-55 CHI "chitinase, putative", chitinase, putative (.1) AT1G56680 176 / 1e-54 Chitinase family protein (.1) AT3G47540 164 / 7e-51 Chitinase family protein (.1.2) AT2G43600 163 / 1e-49 Chitinase family protein (.1) AT3G12500 138 / 3e-39 PR-3, PR3, CHI-B, B-CHI, ATHCHIB PATHOGENESIS-RELATED 3, basic chitinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010862 [exp] 294 / 9e-102 AT2G43590 262 / 1e-88 Chitinase family protein (.1) Lus10010861 [exp] 293 / 2e-101 AT2G43590 263 / 6e-89 Chitinase family protein (.1) Lus10024368 [exp] 291 / 2e-100 AT2G43590 264 / 2e-89 Chitinase family protein (.1) Lus10032794 [exp] 275 / 3e-94 AT2G43590 265 / 6e-90 Chitinase family protein (.1) Lus10003587 [exp] 275 / 3e-94 AT2G43590 270 / 1e-91 Chitinase family protein (.1) Lus10003231 [exp] 265 / 3e-90 AT3G54420 241 / 2e-80 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10035618 [exp] 262 / 6e-89 AT2G43590 229 / 1e-75 Chitinase family protein (.1) Lus10003226 [exp] 262 / 1e-87 AT3G54420 269 / 2e-89 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10035624 [exp] 261 / 2e-87 AT2G43590 246 / 5e-81 Chitinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093800 [exp] 257 / 2e-86 AT3G54420 369 / 8e-130 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093900 [exp] 253 / 5e-85 AT3G54420 360 / 3e-126 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094100 [exp] 252 / 2e-84 AT3G54420 350 / 3e-122 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125100 [exp] 250 / 9e-84 AT3G54420 336 / 1e-116 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094000 [exp] 249 / 2e-83 AT3G54420 340 / 2e-118 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125000 [exp] 238 / 9e-79 AT3G54420 421 / 1e-150 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093700 [exp] 234 / 3e-77 AT3G54420 413 / 3e-147 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.002G186500 [exp] 152 / 1e-45 AT1G02360 413 / 2e-147 Chitinase family protein (.1) Potri.014G111800 [exp] 148 / 7e-44 AT4G01700 422 / 1e-150 Chitinase family protein (.1) Potri.009G142150 [exp] 139 / 8e-41 AT3G12500 365 / 8e-128 PATHOGENESIS-RELATED 3, basic chitinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF00182 [flax] [poplar] Glyco_hydro_19 Chitinase class I
Representative CDS sequence Show only first row Show all	>Lus10024369 pacid=23174984 polypeptide=Lus10024369 locus=Lus10024369.g ID=Lus10024369.BGIv1.0 annot-version=v1.0 ATGGCGACAAACTTGAATCTAGTCATCACCTCCGTCGTCTTCTCAGCCATAATTCTGGCCGCCGGTTGCCTGGTGGAAGCCACCCGGGTATCCAACGTCA TCTCACCGGCGTTCTTCTACGGAATTCTGGACAAAACAAGTCCGAATTGCGAAGGCAGAGCTTTCTACAGCCGTCAATCTTTCCTCACCGCCGCCAGATC CTACCACCACTTCGCCAAACTCGCCTCCGTTGACGATTCCAAGCGTGAGATCGCTGCTTTCTTCGCCCACGTCACCCACCAAACCGCCCATTTATGCTAC GTGGAGCAGCTGACTAGGCAGACGTACTGCAATTCGTCGATGGGCCCGTGCGCTCCGGGGAAGAAGTACTACGGCAGGGGGCCACTTCAGCTGACGTGGA ATTATGATTACGAAGCGTGCGGGCAGGCAAACCAGTTTGACGGGTTGAACGACCCTGACATTGTGTATCGGAGCCCCGTGGTTGCCTGGAAGACGGCGCT ATGGATTTGGATGCGGAGTGTGCGTCCGGTATTGGACCATGGGTTCGGAGCCACGATTCGTCGAGTTAGTGGCTCCGAGTGTAACGGTGGGGACACCAAG AATGTACAGGCTCGAGTGAGCTATTACTTAGATTATTGTAAGCATTTTGGAGTTACTCCTGGGCCTAACCTCAGCTGCTAG
AA sequence Show only first row Show all	>Lus10024369 pacid=23174984 polypeptide=Lus10024369 locus=Lus10024369.g ID=Lus10024369.BGIv1.0 annot-version=v1.0 MATNLNLVITSVVFSAIILAAGCLVEATRVSNVISPAFFYGILDKTSPNCEGRAFYSRQSFLTAARSYHHFAKLASVDDSKREIAAFFAHVTHQTAHLCY VEQLTRQTYCNSSMGPCAPGKKYYGRGPLQLTWNYDYEACGQANQFDGLNDPDIVYRSPVVAWKTALWIWMRSVRPVLDHGFGATIRRVSGSECNGGDTK NVQARVSYYLDYCKHFGVTPGPNLSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10024369 [exp]	0	1
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10043142 [exp]	6.4	0.8820
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10032553 [exp]	16.1	0.8389
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10023610 [exp]	24.7	0.8464
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10034548 [exp]	26.8	0.8591
AT5G20110			Dynein light chain type 1 fami...		Lus10014484 [exp]	31.2	0.8558
AT5G14020			Endosomal targeting BRO1-like ...		Lus10012563 [exp]	35.5	0.8399
AT1G06980			unknown protein		Lus10042244 [exp]	45.3	0.8453
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020115 [exp]	49.9	0.8444
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10020875 [exp]	50.2	0.8271
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10010949 [exp]	51.3	0.8362

Compare expression of checked genes

Lus10024369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.