Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02130 386 / 5e-132 NDP1 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010858 [exp] 572 / 0 AT5G02130 289 / 1e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003964 [exp] 571 / 0 AT5G02130 425 / 6e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023783 [exp] 423 / 1e-144 AT5G02130 294 / 2e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000114 [exp] 387 / 4e-134 AT5G02130 241 / 2e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G091400 [exp] 487 / 2e-171 AT5G02130 405 / 2e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024371 pacid=23175014 polypeptide=Lus10024371 locus=Lus10024371.g ID=Lus10024371.BGIv1.0 annot-version=v1.0 ATGATCCGTTCAGCATTCAGGCTGTTCCGAGCGGCATCCACCGCCACTGCCACGGTGGCGAGCTATGGATTCAATTCTCGTAACCTCACTGTTTTCTCCC CATTGTTTATAAGGCGGTTCCACGACAAAATCTCTGGTCCGAATGTGAACCCGGTTGCCCTTCAGATGGTCGACTACGCTCTCTCGCTTCCACGCTCTCA AAAATCAGATGAATCATATAGGGAAGCTATGTTGATGCTGGAGCAGTGCCTTGCTTCTCAATCGAGTAATGATGAAGATTCCGTCACACAGAATTCTAAG GGCATCATCTTACTCGCCATCTCCAATTTATCGTTTGAGAGGGGGGACAGCAGCAACGCCTTGGAGCAGCTACAGAGAATTCAAACATTGGACAGGGCAT CCTTGGGCGTTAAAGTTGCTGCATTGGAAGCTCTTGTTGGGGTGAACTTGGAGTTGGGGAATGATGATGCTTCATCAGTGCTGGCAGATAGATGTTTACA ACTCTTGCAAAACGACGAATTAGCAAGTACCAGTGCTGGATTCAACGTTGCAGATGCTCGTGCTAAGGTGCTCAAAGGTCTCGTCGAGTTTGTTAGCGGA AATGTCAAAGGAGCTGAAGCGTTGTTTGGAGAATTACAGGGCAATCAAAACTGTGTTGGATCTGCTGCTTTGTCATATGGAGAATTCTTACATGCTACAC GAAATTTCGCGATGGCTAAGGAAGTGTACCGCAAGGTTACTGAAGGAGTGGCTGAGAACAAAGGTTTCAGTGACATAAATGCTTTGGCAGCTTGCAATAT GGCTTCGGATCAAGTTGAGATTGCAGCCACTTGTTCCCTGGGACAGCTTCAATCACACATGGGGAAATTCGGTGATGCGGAAGAAACATTGACCACTGCA CTAAACAAGGCAGAATCACTATATGGTCCTCGCCACCCTAAGGTTGGAGTAGTGTTGACTTGCTTGGCCCTCATGCTCTGGCAGAAAGGGATACAAGAAC GCTCTACTTCTCTCTTAATTCAGGAGGGGCTCTACAGAAGAGCACTGGAATTGCTGAAAGTTCCACCGGTGGATTTTGAAGGTAGCGCCAAAATGGGAGC TTGGAAGGACATTGCAGCCCTTGCGACAGCCGGATATGCAGCACTTTGTGTTCAAGATAACAGAAGGAGTGAAGGTGAGAAGCTGAGGAGTTGGGCAGTA GCTCGATGGAGAAACGGCCGGTTGACTCTCGATGAGGCACTGAAGATGTCACAATCTTCTGATGGAGTTCCGGTGATCGATACTCGTACTGCTAGAATTC TGTAA
AA sequence Show only first row Show all	>Lus10024371 pacid=23175014 polypeptide=Lus10024371 locus=Lus10024371.g ID=Lus10024371.BGIv1.0 annot-version=v1.0 MIRSAFRLFRAASTATATVASYGFNSRNLTVFSPLFIRRFHDKISGPNVNPVALQMVDYALSLPRSQKSDESYREAMLMLEQCLASQSSNDEDSVTQNSK GIILLAISNLSFERGDSSNALEQLQRIQTLDRASLGVKVAALEALVGVNLELGNDDASSVLADRCLQLLQNDELASTSAGFNVADARAKVLKGLVEFVSG NVKGAEALFGELQGNQNCVGSAALSYGEFLHATRNFAMAKEVYRKVTEGVAENKGFSDINALAACNMASDQVEIAATCSLGQLQSHMGKFGDAEETLTTA LNKAESLYGPRHPKVGVVLTCLALMLWQKGIQERSTSLLIQEGLYRRALELLKVPPVDFEGSAKMGAWKDIAALATAGYAALCVQDNRRSEGEKLRSWAV ARWRNGRLTLDEALKMSQSSDGVPVIDTRTARIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10024371 [exp]	0	1
AT1G17140		RIP1, ICR1	ROP INTERACTIVE PARTNER 1, int...		Lus10013708 [exp]	1.0	0.9511
AT5G45650			subtilase family protein (.1)		Lus10007083 [exp]	2.8	0.9332
AT4G35170			Late embryogenesis abundant (L...		Lus10022644 [exp]	4.2	0.9098
AT3G60220		ATL4	TOXICOS EN LEVADURA 4 (.1)		Lus10019496 [exp]	5.8	0.8754
AT5G01870			Bifunctional inhibitor/lipid-t...		Lus10025148 [exp]	7.1	0.9083
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10018753 [exp]	7.9	0.9296
					Lus10018463 [exp]	8.0	0.9106
					Lus10025229 [exp]	8.2	0.8514
AT5G59970			Histone superfamily protein (....		Lus10028464 [exp]	8.7	0.9265
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10013544 [exp]	8.7	0.9267

Compare expression of checked genes

Lus10024371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.