Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39720 167 / 2e-48 RHC2A RING-H2 finger C2A (.1) AT5G59550 165 / 1e-47 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G46620 163 / 8e-47 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G56580 102 / 1e-24 RING/U-box superfamily protein (.1.2.3) AT2G40830 101 / 3e-24 RHC1A RING-H2 finger C1A (.1.2.3) AT3G10815 97 / 9e-24 RING/U-box superfamily protein (.1) AT3G19950 99 / 1e-23 RING/U-box superfamily protein (.1) AT1G60360 91 / 1e-20 RING/U-box superfamily protein (.1) AT5G01980 88 / 4e-19 RING/U-box superfamily protein (.1) AT3G13430 87 / 4e-19 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000023 [exp] 265 / 7e-89 AT5G59550 159 / 5e-47 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10004712 [exp] 201 / 1e-61 AT5G59550 294 / 6e-97 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10010856 [exp] 171 / 2e-47 AT5G59550 120 / 3e-29 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040783 [exp] 152 / 8e-44 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040278 [exp] 131 / 3e-36 AT5G59550 224 / 2e-71 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10001582 [exp] 109 / 2e-28 AT2G40830 178 / 2e-55 RING-H2 finger C1A (.1.2.3) Lus10003698 [exp] 109 / 2e-27 AT2G40830 263 / 5e-87 RING-H2 finger C1A (.1.2.3) Lus10010179 [exp] 106 / 1e-26 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10030755 [exp] 107 / 2e-26 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G087800 [exp] 237 / 2e-76 AT5G59550 258 / 1e-83 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G201300 [exp] 182 / 4e-54 AT2G39720 240 / 2e-75 RING-H2 finger C2A (.1) Potri.008G058100 [exp] 182 / 4e-54 AT5G59550 225 / 8e-70 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G034800 [exp] 156 / 1e-44 AT3G46620 236 / 8e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G243300 [exp] 144 / 5e-40 AT3G46620 239 / 8e-76 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G032100 [exp] 107 / 9e-27 AT2G40830 327 / 1e-111 RING-H2 finger C1A (.1.2.3) Potri.012G036700 [exp] 108 / 1e-26 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.016G029300 [exp] 107 / 1e-26 AT2G40830 317 / 9e-108 RING-H2 finger C1A (.1.2.3) Potri.015G028400 [exp] 105 / 2e-25 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.002G085800 [exp] 103 / 8e-25 AT1G60360 233 / 4e-74 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06547 [flax] [poplar] DUF1117 Protein of unknown function (DUF1117) CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10024372 pacid=23174919 polypeptide=Lus10024372 locus=Lus10024372.g ID=Lus10024372.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTTCCCCAACTGGATCCGCCTCTTCCTTCTGGTGCTACAGATGCAGCCGACTGTTCCACCTCCGCCTCCATTCCAGCGACGACTCCATCG TCCTCTGCCCTGACTGCGGCGGCGGATTCGTCGAGGAATTCATCGCCGTCTCTCCCGCCGCTGCAATGTACCAGGACAATCCGGTCAATCACGATTCTTC CTCCTCCGCCGCATCGACCCCTAGGTACCGCCGCAACAGCCGACGGAGCGGCGGAGATCGCTCTTCTTTCAATCCAGCGGAGACCGCTCCCCTTTCAATC CCGTCATCGTCCTCCGCGGCCCCCCTGACGGCGGCGTTGACTCAGCTCGAAATGACCAGCCTTAATCGCTGCGACCGTCAACCAGCTTCGAAATCCGCGA TCGAATCGATGCCTATAATCAAGATCGTGTCAAGCCACATCTCGATGGAATCCCACTGCGCAGTATGCAAAGAAGCGTTCCAGCTGGATTCGGAGGCCAG AGAGATGCCATGTAAGCACATTTACCATTCAGATTGCATCCTCCCTTGGCTTTCCCTCCGAAACTCCTGCCCTGTTTGCCGCCACGAGCTCGCCACCGAA ATCCACAGGGATCGATCGTCGTCATCGCCGAGGTCCGATGACGAGACGGTCGGGCTCACCATATGGAGACTCCCCGGCGGCGGATTTGCCGTTGGGAGGT TCAGCGACGGAACCAGAGCGTCTGATTTCCCCGTAGTGTTCACCGAGGTTGACGGCGGATTCAACGCCGCCCCAGGCGTTCCGAGGAGGATTTCATGGGC GCCTATTAGCCGGAGATCAAGAGAAAGCAGCGCATTCCGCCGTGCTGTCCGGGGGTTCTTCTCAATTTTCCGGCGGATTGGAAGAGGCTCCTCTTCTGGT AATCGCAACTCTAATTTGATAAGAAGAAGTAGGTCAAATTTAGGCTCAGACAGGACGTTGACCATGAGACGCCGTATTGGTGAGACTCGGGCTTTGGATG ATCGTAGTTGGTGA
AA sequence Show only first row Show all	>Lus10024372 pacid=23174919 polypeptide=Lus10024372 locus=Lus10024372.g ID=Lus10024372.BGIv1.0 annot-version=v1.0 MASSSPTGSASSFWCYRCSRLFHLRLHSSDDSIVLCPDCGGGFVEEFIAVSPAAAMYQDNPVNHDSSSSAASTPRYRRNSRRSGGDRSSFNPAETAPLSI PSSSSAAPLTAALTQLEMTSLNRCDRQPASKSAIESMPIIKIVSSHISMESHCAVCKEAFQLDSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELATE IHRDRSSSSPRSDDETVGLTIWRLPGGGFAVGRFSDGTRASDFPVVFTEVDGGFNAAPGVPRRISWAPISRRSRESSAFRRAVRGFFSIFRRIGRGSSSG NRNSNLIRRSRSNLGSDRTLTMRRRIGETRALDDRSW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10024372 [exp]	0	1
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10029624 [exp]	1.4	0.8460
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Lus10032450 [exp]	2.2	0.8734
AT2G06050		AtOPR3, DDE1, O...	DELAYED DEHISCENCE 1, oxophyto...		Lus10000966 [exp]	3.5	0.8451
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10035764 [exp]	7.0	0.8194
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10037437 [exp]	8.5	0.8286
AT1G36370		SHM7	serine hydroxymethyltransferas...		Lus10015471 [exp]	11.2	0.8169
AT5G54400			S-adenosyl-L-methionine-depend...		Lus10037890 [exp]	12.2	0.7630
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10036571 [exp]	15.7	0.8013
AT1G25400			unknown protein		Lus10041438 [exp]	17.0	0.7846
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10009925 [exp]	17.0	0.8153

Compare expression of checked genes

Lus10024372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.