Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02160 110 / 7e-32 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010856 [exp] 0 / 1 AT5G59550 120 / 3e-29 zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G087701 [exp] 126 / 3e-38 AT5G02160 101 / 2e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024373 pacid=23174901 polypeptide=Lus10024373 locus=Lus10024373.g ID=Lus10024373.BGIv1.0 annot-version=v1.0 ATGGCAACTCTTTCTGCTCTGCAAACTTTCTGCACAGGAAATTCACCTCACAGAGTTGATCATCTTCGAGGATGCAGCAGCTCTTCCGCAACACCAACTT GGAGTTCAATCTCCAAGAAGAAGAAGAGCATGAGATCATCATTGACTGTGGTGGCAGCCGTCGGAGATGTCTCCCCTGACGGCACAGTCTACCTCCTCGC CGGCGCCGCCACCATCGCTCTGCTTGGGACTGCCTTGCCTGCATTCTTCTCTCGCAAAGACACTTGCCCGGAGTGCGACGGGGCAGGTTTCGTACGGAAA TCGGCGGCGACCTTGAGAGCAAATGCTGCAAGGAAGGATCAGGCTCAGATAGTTTGCCAGAATTGCAATGGGCTAGGCAAGCTCAACCAAGTCGACAAAT GA
AA sequence Show only first row Show all	>Lus10024373 pacid=23174901 polypeptide=Lus10024373 locus=Lus10024373.g ID=Lus10024373.BGIv1.0 annot-version=v1.0 MATLSALQTFCTGNSPHRVDHLRGCSSSSATPTWSSISKKKKSMRSSLTVVAAVGDVSPDGTVYLLAGAATIALLGTALPAFFSRKDTCPECDGAGFVRK SAATLRANAARKDQAQIVCQNCNGLGKLNQVDK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02160			unknown protein		Lus10024373 [exp]	0	1
AT3G27690		LHCB2.3, LHCB2:...	LIGHT-HARVESTING CHLOROPHYLL B...		Lus10001741 [exp]	1.4	0.9484
AT4G09010		TL29, APX4	thylakoid lumen 29, ascorbate ...		Lus10008718 [exp]	2.0	0.9453
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Lus10035560 [exp]	4.4	0.9085
AT4G09010		TL29, APX4	thylakoid lumen 29, ascorbate ...		Lus10020942 [exp]	5.5	0.9412
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Lus10008721 [exp]	6.7	0.9299
AT1G07700			Thioredoxin superfamily protei...		Lus10024726 [exp]	10.6	0.9295
AT5G44520			NagB/RpiA/CoA transferase-like...		Lus10008059 [exp]	10.6	0.9318
AT3G08940		LHCB4.2	light harvesting complex photo...		Lus10027786 [exp]	11.2	0.9143
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10019290 [exp]	11.7	0.9271
AT1G55370		NDF5	NDH-dependent cyclic electron ...		Lus10002626 [exp]	11.7	0.8991

Compare expression of checked genes

Lus10024373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.