Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02190 548 / 0 EMB24, ATASP38, PCS1 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) AT2G39710 516 / 0 Eukaryotic aspartyl protease family protein (.1) AT1G66180 256 / 8e-81 Eukaryotic aspartyl protease family protein (.1) AT5G37540 243 / 1e-75 Eukaryotic aspartyl protease family protein (.1) AT2G03200 144 / 4e-38 Eukaryotic aspartyl protease family protein (.1) AT3G25700 132 / 5e-34 Eukaryotic aspartyl protease family protein (.1.2) AT1G01300 124 / 5e-31 Eukaryotic aspartyl protease family protein (.1) AT2G35615 122 / 2e-30 Eukaryotic aspartyl protease family protein (.1) AT5G10770 120 / 2e-29 Eukaryotic aspartyl protease family protein (.1) AT3G54400 113 / 3e-27 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004713 [exp] 520 / 0 AT2G39710 567 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10040279 [exp] 519 / 0 AT2G39710 566 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10002707 [exp] 516 / 0 AT2G39710 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10000514 [exp] 474 / 3e-167 AT2G39710 541 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10010854 [exp] 398 / 1e-139 AT5G02190 294 / 4e-99 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Lus10010855 [exp] 371 / 2e-122 AT5G02170 501 / 2e-171 Transmembrane amino acid transporter family protein (.1.2) Lus10003999 [exp] 130 / 6e-33 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10035961 [exp] 125 / 3e-31 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10025702 [exp] 125 / 8e-31 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G087600 [exp] 664 / 0 AT5G02190 548 / 0.0 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Potri.008G058000 [exp] 547 / 0 AT2G39710 607 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G201400 [exp] 547 / 0 AT2G39710 583 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G087550 [exp] 253 / 4e-83 AT5G02190 234 / 8e-76 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Potri.017G131800 [exp] 247 / 3e-77 AT1G66180 570 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.004G085000 [exp] 242 / 4e-75 AT1G66180 605 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 145 / 7e-39 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 142 / 7e-38 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.018G014800 [exp] 135 / 7e-35 AT5G10770 312 / 9e-102 Eukaryotic aspartyl protease family protein (.1) Potri.003G195500 [exp] 125 / 2e-31 AT3G54400 559 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10024375 pacid=23174990 polypeptide=Lus10024375 locus=Lus10024375.g ID=Lus10024375.BGIv1.0 annot-version=v1.0 ATGAATCACAAACCTAACAATTTATGCACTTTCCACGCAACCTTCAACCTGATATCTATACTCTTGTTAATCCTCTTCGTAGAATCACTCCTCTGTTTTT CTCCCCAGCAACAGGGGATCATCCTGCCACTCCAAACCCGGGAAGTCCCGTCCGGGTCCGTTCCTCGACCCGCCAGCAAGCTCCCCTTCCGCCACAATGT CAGCCTCACCGTCACTCTCACCGTCGGCACTCCGCCTCAGAATGTCTCTATGGTGATCGACACCGGAAGCGAACTCTCCTGGCTCCGCTGCAACAGGACT CGACCGGCGTTCCCGACTTCGTTCGACCCGTTTAACTCCACTTCTTACCGACCCGTACCTTGCTCTTCCCCGACCTGCACCGCTCGCACCCACGACTTTC CGATCCCGGCGTCCTGCGATTCCGGCAACCTCTGCCACGCCACGCTCTCCTACGCCGATGCCTCCTCGTCGGAAGGAAACCTCGCCACCGAAATTTTCCG GATCGGAAGTTCCGACCTCTCGGGTCTGATTTTTGGGTGTATGGACTCGGTTTACAGCTCCAACTCGGAAGAAGATTCTCGAAACACAGGGCTAATGGGG ATGAACCGCGGATCCCTCTCTTTCGTCTCCCAAATGGGGTTCCCGAAATTCTCGTATTGCATCTCCGGCAGCGACTTCTCAGGATTACTCCTCCTCGGGG AAGCCAATTTCACCGGATTGCTTCCGTTAAATTACACGCCGTTAATTCAAATGTCGACGCCGTTACCGTACTTCGACCGGGTCGCGTACACCGTCCAGCT GGAAGGAATCAAAGTCGACGACAAACTCCTCCCGGTTCCTAAATCCGTCTTCGTACCCGACCACACCGGGGCGGGTCAGACCATGGTCGACTCAGGTACG CAGTTCACCTTCCTCCTCGGACCGGCGTACGCTGCTTTGAAATCGGAGTTTCTGAACCGGACCGCTGGGATTCTCCGGGTCCTTGAGGATCCGGATTTCG TGTTCCAAGGCGCAATGGATTTGTGCTTCCGGATTCCGATCGGTCAGCGGGTCCTTCCTCGGGTACCGACGGTGAGCCTGGTGTTTGAAGGCGCGGAGAT GCGGGTGGGCGGCGGAAGCGTTCTGTATCGGGTCCCGGGGGAGATTAGGGGGAAGGATTGGGTGCATTGCTTGTCGTTTGGGAATTCGGACCTGCTAGGA GTTGAAGCGTTCGTGATCGGACATCATCATCAGCAGAACGTGTGGATGGAATTCGATCTGGAGAGGTCGAGAATCGGGCTGGCTCATGTACGGTGTGATC TAGCGGGTCAGAGATATGGGGTGGGCCTATGA
AA sequence Show only first row Show all	>Lus10024375 pacid=23174990 polypeptide=Lus10024375 locus=Lus10024375.g ID=Lus10024375.BGIv1.0 annot-version=v1.0 MNHKPNNLCTFHATFNLISILLLILFVESLLCFSPQQQGIILPLQTREVPSGSVPRPASKLPFRHNVSLTVTLTVGTPPQNVSMVIDTGSELSWLRCNRT RPAFPTSFDPFNSTSYRPVPCSSPTCTARTHDFPIPASCDSGNLCHATLSYADASSSEGNLATEIFRIGSSDLSGLIFGCMDSVYSSNSEEDSRNTGLMG MNRGSLSFVSQMGFPKFSYCISGSDFSGLLLLGEANFTGLLPLNYTPLIQMSTPLPYFDRVAYTVQLEGIKVDDKLLPVPKSVFVPDHTGAGQTMVDSGT QFTFLLGPAYAALKSEFLNRTAGILRVLEDPDFVFQGAMDLCFRIPIGQRVLPRVPTVSLVFEGAEMRVGGGSVLYRVPGEIRGKDWVHCLSFGNSDLLG VEAFVIGHHHQQNVWMEFDLERSRIGLAHVRCDLAGQRYGVGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02190		EMB24, ATASP38,...	PROMOTION OF CELL SURVIVAL 1, ...		Lus10024375 [exp]	0	1
					Lus10042511 [exp]	1.0	0.9030
AT4G20160			unknown protein		Lus10036249 [exp]	3.5	0.8905
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10025823 [exp]	4.9	0.8457
AT4G28760			Protein of unknown function (D...		Lus10011911 [exp]	5.1	0.8146
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10018351 [exp]	5.3	0.8739
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10013956 [exp]	6.7	0.8790
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10022645 [exp]	7.1	0.8704
AT1G55260			Bifunctional inhibitor/lipid-t...		Lus10042449 [exp]	7.3	0.8232
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10014288 [exp]	9.2	0.7856
AT4G04940			transducin family protein / WD...		Lus10036625 [exp]	13.4	0.8207

Compare expression of checked genes

Lus10024375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.