Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15130 361 / 3e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 351 / 3e-111 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33170 335 / 1e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 329 / 1e-102 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 322 / 9e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 320 / 1e-100 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 322 / 5e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G47840 319 / 5e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 322 / 2e-99 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G27110 315 / 1e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017446 [exp] 344 / 3e-108 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015225 [exp] 338 / 1e-105 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004253 [exp] 338 / 3e-105 AT3G49170 832 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014594 [exp] 332 / 2e-104 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 330 / 2e-103 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 324 / 7e-101 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 328 / 2e-100 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 321 / 2e-99 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007806 [exp] 321 / 4e-99 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G076100 [exp] 707 / 0 AT4G33170 383 / 1e-121 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 360 / 1e-114 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 362 / 1e-113 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G006800 [exp] 345 / 3e-110 AT2G33680 780 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 345 / 5e-109 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G021700 [exp] 343 / 5e-109 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G111300 [exp] 347 / 7e-109 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G244500 [exp] 341 / 2e-108 AT3G15130 891 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 345 / 2e-107 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 333 / 4e-104 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10024376 pacid=23174894 polypeptide=Lus10024376 locus=Lus10024376.g ID=Lus10024376.BGIv1.0 annot-version=v1.0 ATGTCTCACCCAGCGGAAGCGATTGGCTTTCTACTGCATCAATGCGCCAAATTGAAGGCATATACCCGCGGACTTACCCTCCATGCCGCAGCATACAAGT CAGGCATCCACTCGGATGTCATCGTCTCCAATCACGTCCTCAACATGTACGCCAAATGCGGCAAAATGTTCCATGCCAGAGAGGTGTTCGACGAAATGCC GCAGAGAAACCTGGTTTCTTGGTCCGCCATGATCTCAGGCTATGACCAGGTTGCAGAACATTCGTTAGCACTCGACCTCTATTCTCAAATGTGCTTATCT CCCAACGAGTATATATTTGCGAGTGCTATCAGTGCATGTGCAGGTCTCACGGCGCTGGTTGCGGGACAACAACTTCATGGTCAGTCGTTGAAGTTGGGCT GTGCCTCCATTTCTTTTGTTGCAAATGCACTCATCTCAATGTATATGAAATGCGGTCGGTGCAGTGATGCCTTGTTGGTTCACTCCGGGGTTTTACACCC TACCCTTGTCTCTTACAATGCTTTGATTTCTGGATTTGCTGACAGTGAAAAATCCATGAAAGGATTCGAAACTTTCAAGCTGATGCAAAGACAGAATCTT GTGGCGGATGAGTTTACTTTATCAGGAATGTTGAAGATCTGCAGAGATTGTGATGATCAACTGAATGGACTTCTGCTGCATTGCTATTCAGTAAAGTTAA AGCTCGACTCTACTGCTTTTATCGGTAATGCAATCATCAAAATGTATTCAAACTTCAAATTGGTGGAAGAAGCAGAGAAGGCTTTCTGGACAATTGAACA TAAGGATTTAATATCATGGAACACAATCCTGACCGCTTGTTCTCACTGCGACGATCACGTAAGGGCGTTGGATGTTTTTAAAGTTATGTTAACTGAAGAT AATCTCCATCCGGATGAATTCACATGTTCAGGTGCTCTAGCGGCTTGCGCTGGACTTGCATCGTTACAACACGGCAAGGAGATTCATACTCATCTGATCA GGACCAAGCTGTATAATACTGATGTCGGAGTGAAAAACTCCCTTGTAAACATGTATGCCAAATGCGGTTCCATTGCCGATTCATACAACGTCTTCAACAC CATGGAAACTCGGAATCTCGTTTCCTGGAACACCATAATTGCTGGATGTGGACATCACGGTCTCGGACTCAAGGCCCTCGAACTTTTTCAAGACATGAAG AGAGAAGGAATAAGACCGGATTCAGTTACATTTCTTACTGTCTTAACGGCTTGCAATCATTCTGGTTTAATCAACGAAGGCCGAATATGTCTCGATTCCA TGGTTGACACTTACGGAATTGTTCCTGAGACAGAGCATTTATCAAGTCTCATCGATCTACTAGGACGCGCAGGGAGACTACACGAGGCTGAAGAGTATAT TAACAGATTCCGGTTTGGAAACGATCCTATTGTGTTGGGGAGTCTCCTCTCTGGATGTGTTTCGCATGGAGATTTCACCATGGGAGACCGTATAGGGAAG AGGCTTCTGAAGCTTCAGCCGGAGACTACTTCACCTTATGTTTTGCTGTCGAATCTTTACGCCAGTGGTGAGATATGGCGAGGAGTTGCAGAGGCGAAGA GGATGCTTAAGGTTAGGGGGTTGAAGAAAGAGCCTGGGCATAGCCTGATAGAATTGGATGGAGCTTTTGAAAAGTTCAGCAAAGGAGACTTCTCACATTG CAGGATTAAAGATATCAAGAACACTCTTACAGCTCTTAGTTCTACAGAGGAACAAGAGCCATTTTGCAGTATATACTAA
AA sequence Show only first row Show all	>Lus10024376 pacid=23174894 polypeptide=Lus10024376 locus=Lus10024376.g ID=Lus10024376.BGIv1.0 annot-version=v1.0 MSHPAEAIGFLLHQCAKLKAYTRGLTLHAAAYKSGIHSDVIVSNHVLNMYAKCGKMFHAREVFDEMPQRNLVSWSAMISGYDQVAEHSLALDLYSQMCLS PNEYIFASAISACAGLTALVAGQQLHGQSLKLGCASISFVANALISMYMKCGRCSDALLVHSGVLHPTLVSYNALISGFADSEKSMKGFETFKLMQRQNL VADEFTLSGMLKICRDCDDQLNGLLLHCYSVKLKLDSTAFIGNAIIKMYSNFKLVEEAEKAFWTIEHKDLISWNTILTACSHCDDHVRALDVFKVMLTED NLHPDEFTCSGALAACAGLASLQHGKEIHTHLIRTKLYNTDVGVKNSLVNMYAKCGSIADSYNVFNTMETRNLVSWNTIIAGCGHHGLGLKALELFQDMK REGIRPDSVTFLTVLTACNHSGLINEGRICLDSMVDTYGIVPETEHLSSLIDLLGRAGRLHEAEEYINRFRFGNDPIVLGSLLSGCVSHGDFTMGDRIGK RLLKLQPETTSPYVLLSNLYASGEIWRGVAEAKRMLKVRGLKKEPGHSLIELDGAFEKFSKGDFSHCRIKDIKNTLTALSSTEEQEPFCSIY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15130			Tetratricopeptide repeat (TPR)...		Lus10024376 [exp]	0	1
AT5G27110			Tetratricopeptide repeat (TPR)...		Lus10009702 [exp]	4.2	0.7969
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10035164 [exp]	5.5	0.8273
AT1G79120			Ubiquitin carboxyl-terminal hy...		Lus10014514 [exp]	7.4	0.7817
AT5G66500			Tetratricopeptide repeat (TPR)...		Lus10041770 [exp]	14.0	0.7960
AT4G08210			Pentatricopeptide repeat (PPR-...		Lus10028082 [exp]	14.3	0.7596
AT1G79220			Mitochondrial transcription te...		Lus10031184 [exp]	17.3	0.8220
AT5G28460			Pentatricopeptide repeat (PPR)...		Lus10018279 [exp]	20.4	0.7620
AT2G37560		ATORC2	origin recognition complex sec...		Lus10025330 [exp]	25.3	0.7528
AT1G25360			Pentatricopeptide repeat (PPR)...		Lus10028106 [exp]	28.8	0.7784
AT5G08305			Pentatricopeptide repeat (PPR)...		Lus10017386 [exp]	33.5	0.7409

Compare expression of checked genes

Lus10024376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.