Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09320 399 / 3e-141 DHHC-type zinc finger family protein (.1) AT5G04270 215 / 2e-69 DHHC-type zinc finger family protein (.1) AT4G00840 116 / 1e-30 DHHC-type zinc finger family protein (.1) AT4G22750 114 / 2e-29 DHHC-type zinc finger family protein (.1.2) AT4G22753 112 / 1e-27 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT3G60800 105 / 2e-26 DHHC-type zinc finger family protein (.1) AT5G50020 91 / 1e-20 DHHC-type zinc finger family protein (.1.2) AT4G24630 91 / 1e-20 DHHC-type zinc finger family protein (.1) AT3G56930 90 / 3e-20 DHHC-type zinc finger family protein (.1.2) AT5G41060 85 / 1e-18 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010852 [exp] 548 / 0 AT3G09320 418 / 6e-149 DHHC-type zinc finger family protein (.1) Lus10038701 [exp] 268 / 1e-89 AT5G04270 298 / 2e-102 DHHC-type zinc finger family protein (.1) Lus10037973 [exp] 164 / 5e-49 AT5G04270 207 / 1e-66 DHHC-type zinc finger family protein (.1) Lus10024561 [exp] 113 / 4e-29 AT3G60800 411 / 2e-145 DHHC-type zinc finger family protein (.1) Lus10032199 [exp] 112 / 7e-29 AT3G60800 409 / 2e-144 DHHC-type zinc finger family protein (.1) Lus10015872 [exp] 101 / 3e-25 AT4G22750 241 / 4e-88 DHHC-type zinc finger family protein (.1.2) Lus10002694 [exp] 100 / 5e-24 AT4G00840 353 / 4e-122 DHHC-type zinc finger family protein (.1) Lus10012096 [exp] 87 / 5e-19 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10010447 [exp] 87 / 7e-19 AT3G56930 451 / 3e-152 DHHC-type zinc finger family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G087400 [exp] 436 / 5e-156 AT3G09320 409 / 3e-145 DHHC-type zinc finger family protein (.1) Potri.016G100200 [exp] 422 / 1e-150 AT3G09320 426 / 5e-152 DHHC-type zinc finger family protein (.1) Potri.010G226100 [exp] 253 / 9e-84 AT5G04270 296 / 3e-101 DHHC-type zinc finger family protein (.1) Potri.001G117100 [exp] 107 / 3e-27 AT3G60800 365 / 6e-127 DHHC-type zinc finger family protein (.1) Potri.014G069200 [exp] 107 / 4e-27 AT3G60800 447 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.014G104000 [exp] 105 / 1e-26 AT4G00840 297 / 5e-101 DHHC-type zinc finger family protein (.1) Potri.002G147300 [exp] 105 / 2e-26 AT3G60800 441 / 3e-157 DHHC-type zinc finger family protein (.1) Potri.003G115600 [exp] 102 / 2e-25 AT3G60800 346 / 2e-119 DHHC-type zinc finger family protein (.1) Potri.006G027400 [exp] 88 / 2e-19 AT3G56930 439 / 9e-151 DHHC-type zinc finger family protein (.1.2) Potri.005G195300 [exp] 87 / 2e-19 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10024377 pacid=23174928 polypeptide=Lus10024377 locus=Lus10024377.g ID=Lus10024377.BGIv1.0 annot-version=v1.0 ATGAAGCGAGGCCTTAGCTTTTCCCTCCCGGTTACCGTCGTCCTTTTGGTAATCACCTTCGTTTACTTCTCCACCGTTTTTGTCTTTATCGATCGGTGGT TTGGTCTCATGTCCTCTCCTGGATTGATGAACGCCGTCGTCTTCACCGCCGTCGCCATCATGTCCGTTTTCAGCTACTGCGCTGCCACCATGACGGATCC TGGTCGGGTCCCTTCCACGTACTTGCCGGACATCGAAGACGCCGACAACCCTATACACGAGATTAAGCGCAAGGGAGGAGATTTGAGATATTGCCAGAAG TGTTCCCACTACAAGCCGCCACGAGCTCATCACTGTCGTGTGTGTAAAAGATGTGTGTTGCGTATGGACCATCATTGCATTTGGATAAACAATTGTGTGG GCCATGCGAACTATAAGGTCTTCTTCAACTTTGTTGTCTATGCTGTAACTGCTTGCATTTACTCCCTGGTCCTGCTTGTTGGTAGTCTGACTGTTGATCC GCAAAAGGAGGAACAGCTAAATAGCGGGTTCTTTAGAAGTATATATGTTATTTCAGCGATGTTGTTAGTTCCCTTGAGCGTGGCTTTGAGTGTTCTTTTT GGTTGGCATATCTACCTTGTTCTACAAAACAAAACAACAATTGAGTATCATGAAGGAGTGAGGGCTATGTTGCTTGCGGAGAAAGGTGGAAATATTTATA AGAATCCTTATGACATTGGTGGCTATGGCAATTTGACAGCCATACTAGGTCCAAGCATCTTTTGCTGGTTATTCCCTACAACAAGGCACATCGGGTCTGG CCTGCACTTCCAAACTGCTTATGACCACTTGAAAACTCGAGCATCCTCAAAATGA
AA sequence Show only first row Show all	>Lus10024377 pacid=23174928 polypeptide=Lus10024377 locus=Lus10024377.g ID=Lus10024377.BGIv1.0 annot-version=v1.0 MKRGLSFSLPVTVVLLVITFVYFSTVFVFIDRWFGLMSSPGLMNAVVFTAVAIMSVFSYCAATMTDPGRVPSTYLPDIEDADNPIHEIKRKGGDLRYCQK CSHYKPPRAHHCRVCKRCVLRMDHHCIWINNCVGHANYKVFFNFVVYAVTACIYSLVLLVGSLTVDPQKEEQLNSGFFRSIYVISAMLLVPLSVALSVLF GWHIYLVLQNKTTIEYHEGVRAMLLAEKGGNIYKNPYDIGGYGNLTAILGPSIFCWLFPTTRHIGSGLHFQTAYDHLKTRASSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09320			DHHC-type zinc finger family p...		Lus10024377 [exp]	0	1
AT1G60670			Protein of unknown function (D...		Lus10030566 [exp]	2.8	0.7984
AT5G42940			RING/U-box superfamily protein...		Lus10010372 [exp]	3.2	0.7896
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Lus10038033 [exp]	4.9	0.7648
AT4G18230			unknown protein		Lus10024587 [exp]	11.2	0.6723
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10041880 [exp]	11.5	0.7608
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Lus10029780 [exp]	13.0	0.7381
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Lus10036582 [exp]	13.6	0.7352
AT1G72740	MYB		Homeodomain-like/winged-helix ...		Lus10040111 [exp]	20.1	0.6583
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Lus10023694 [exp]	20.3	0.7336
AT3G04470			Ankyrin repeat family protein ...		Lus10008195 [exp]	22.2	0.6625

Compare expression of checked genes

Lus10024377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.