Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23330 768 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 460 / 4e-151 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 436 / 1e-140 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 428 / 6e-139 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G24000 422 / 1e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 418 / 1e-135 MEF22 mitochondrial editing factor 22 (.1) AT3G02010 421 / 2e-135 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37170 409 / 2e-132 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 404 / 5e-129 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 402 / 8e-128 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010850 [exp] 1390 / 0 AT5G60020 856 / 0.0 laccase 17 (.1) Lus10004081 [exp] 443 / 3e-142 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 437 / 6e-140 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 430 / 9e-140 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 431 / 5e-139 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015225 [exp] 428 / 3e-137 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038839 [exp] 417 / 5e-136 AT5G13230 715 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 427 / 6e-136 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 426 / 8e-136 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G186500 [exp] 766 / 0 AT3G23330 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 461 / 9e-150 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 450 / 2e-147 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 437 / 1e-141 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G001200 [exp] 429 / 2e-141 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 432 / 6e-138 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 426 / 5e-137 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 425 / 5e-137 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G021300 [exp] 420 / 4e-136 AT1G20230 852 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 417 / 2e-135 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10024381 pacid=23175020 polypeptide=Lus10024381 locus=Lus10024381.g ID=Lus10024381.BGIv1.0 annot-version=v1.0 ATGGCTTCTACGCTGGAGGTTCTCGGTGCGCTTCTCCGGAAGCCGGAAGCCGTCACCACCAAAATCCAAGTCAAACAGCTCCTGAAGTCCATTCTCAATC GTCCCGGCGCCATCACCACTAAATCCGAAGCCAAGCAGCTCCACGCCCAAATTCTCAAGTTCAACCCTTCCTCACCTGTTTACATATCTGCAGCAATTTG TGTCTACTCCAACTTCAGTCTCTTAAAAGAATCCCTCCTCCTATTTGATTCCCTCCAGTTCCCGCTTTCTCTAGCCTACAAATCCATCGTCAGATGCTAC GCCGTGAATGGCCTATTTGTTGAGTCACTCTCCTCTTTTATAGAAATGAGAGCTTCCGGTAAGAACCCCGACCACACTGTGTTTCCTTCTGTTCTTAAAG CTTGCACGTTTTTATCGGATTTGAAATTGGGAGAGGCGCTTCATGGGTGCATTATTAGGGCTGGAATGGACATCCATTTGACTACGGGAAATGCCCTCCT TAATATGTACGCAAAACTACAGAGTTTGGCCGAGAGTGAGTGGCGTAGGCGTGATGCCTGCAAGGTGTTCGACGGAATGTCTCTGAGAACTGTGGATAAT CTATTTACAAGTGAACTGCTATCAGAAAAAGTTGCTAGTTGCGTATATGGTAGACTTAAGATGGGTTCAGGAAAGAATAGTGTAAAGAAGGTATTTGAGG AAATGCCAACAAAAGATATTATCTCGTGGAACACTGTCATCGCAGGAAATGGACAAAACGGTATGCATGAAGAAGCTTTAGCAATGCTTAAGGAAATGGG AAATTTCGGGCTGAAACCTGACATTTTTACTCTGTCAGCCGTTCTTCCCATCTTTGCTGAATACGTGGATATTGCTAAGGGAAAAGCGATTCATGGGTAT GCCATAAGATATGGCTTTGACAAAGACTTGTATATAGTCAGCGGCTTAATCAATATGTATTCACGGTGTGCTCGAGTGAAAGATTCGATTCAGGTGTTTA AGATTTCGCCTCGACGAGACAGCATTAGCTGGAACTCGATTATTGCCGGCTGTGTGCAGAATGGTCTCTTTGACGAAGGTTTGATATTCTTTCGACAGAT GTTGACCGACAATATTAGACCCCAGAGCGTTTCATTTTCCAGCATCATGCCAGCTTGTGCTCACTTGACTACATTGAATTTGGGGAAGCAACTCCATGGA TATATTCTCAGGTGTGGTTTTGACGACAATATGTTTATTGCTAGTTCGTTGGTGGATATGTATGCCAAATGCGGTCAAATTAAGATAGCGAAATGGATTT TTGAAGGCATAAAAAGCCATGATACGGTCTCTTGGACAGCCATGATAATGGGTTGTGCTTTGCACGGTAATGCTCAAGATGCCATTTCGTTGTTTGATCA GATGGAATTGGAAGGAGTACGGCCAAATTACGTGGCTTTCACAGCTATCATAACTGCTTGCAATCATGGTGGCTTGTTAGATGAAGGTCAAAGATATTTC GATAGTATGACTCAGAAATACGGTATTAAGCCGGGTATGGAACACTATGCTGCCATGGCAGACCTTCTTGGTCGAAAGGGAAAACTGTCCGAAGCTTATG AATTGATCAGTAGCATGAGCGATCCAACTGGTAGTGTTTGGTCCTTGCTACTTTCAGCTTGTAGAGTACACAAAGACATTGACTTGGCCGAAAAGGTTGC AGAGAGAATATTCGAGCTTGATCCTGAAAATATCGGGGCTCGTGTTCTTATGTCTAATATTTACGCGAGTGCTCGCAGATGGAAGGACGCGGCAAAGGTG CGAATGGGGATAAAGAAAAGTCCGGCGTGTAGTTGGATTGAAGTGAAGAATAAGATGCATACTTTTATTGCAAACGATATGTCACGTCCCGATCGTGATA AGATAGAAGAAGCTCTCGGCGAACTGCTTGAGAAAATGGAGCAAGCAGGGTATGTTCCTGACACAAGTGATGTGTCTTATGATGTTGATGATGAGCAAAA GAAATACTTGCTATATGGTCATAGTGAGAGACTGGCCGTAGCATTTGGGATTATAAGCACCCCTGCTGGGACAACGATTCGAGTTACCAAGAACATCCGG CCGCATGGTGTAAAATCAGATGAAGTTGTCTTTCTTGCTGTGTTAACTGCTATCTCTAGGGTTCAGCTTTCAGTGGCAAAGGAGCATAACATGATCACAA ATATAAAACTAAGGTGGCCAGTTCTTGTCATAGACATACTTGCAGCAGTAATGGGAAGCCAAGCAATCATCATCAGGAACATTCTCAATCATCAAGCGAG AATGGTGGGTGTATGCATCATGACAACATGGCTTCTTTCCATGATGTTGTCGAACTCGGAGGTACTTGTGCAAGGTATGTAG
AA sequence Show only first row Show all	>Lus10024381 pacid=23175020 polypeptide=Lus10024381 locus=Lus10024381.g ID=Lus10024381.BGIv1.0 annot-version=v1.0 MASTLEVLGALLRKPEAVTTKIQVKQLLKSILNRPGAITTKSEAKQLHAQILKFNPSSPVYISAAICVYSNFSLLKESLLLFDSLQFPLSLAYKSIVRCY AVNGLFVESLSSFIEMRASGKNPDHTVFPSVLKACTFLSDLKLGEALHGCIIRAGMDIHLTTGNALLNMYAKLQSLAESEWRRRDACKVFDGMSLRTVDN LFTSELLSEKVASCVYGRLKMGSGKNSVKKVFEEMPTKDIISWNTVIAGNGQNGMHEEALAMLKEMGNFGLKPDIFTLSAVLPIFAEYVDIAKGKAIHGY AIRYGFDKDLYIVSGLINMYSRCARVKDSIQVFKISPRRDSISWNSIIAGCVQNGLFDEGLIFFRQMLTDNIRPQSVSFSSIMPACAHLTTLNLGKQLHG YILRCGFDDNMFIASSLVDMYAKCGQIKIAKWIFEGIKSHDTVSWTAMIMGCALHGNAQDAISLFDQMELEGVRPNYVAFTAIITACNHGGLLDEGQRYF DSMTQKYGIKPGMEHYAAMADLLGRKGKLSEAYELISSMSDPTGSVWSLLLSACRVHKDIDLAEKVAERIFELDPENIGARVLMSNIYASARRWKDAAKV RMGIKKSPACSWIEVKNKMHTFIANDMSRPDRDKIEEALGELLEKMEQAGYVPDTSDVSYDVDDEQKKYLLYGHSERLAVAFGIISTPAGTTIRVTKNIR PHGVKSDEVVFLAVLTAISRVQLSVAKEHNMITNIKLRWPVLVIDILAAVMGSQAIIIRNILNHQARMVGVCIMTTWLLSMMLSNSEVLVQGM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23330			Tetratricopeptide repeat (TPR)...		Lus10024381 [exp]	0	1
AT2G41620			Nucleoporin interacting compon...		Lus10039624 [exp]	5.0	0.9249
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Lus10006741 [exp]	7.1	0.9078
AT4G23540			ARM repeat superfamily protein...		Lus10035446 [exp]	8.0	0.9111
AT1G08130		ATLIG1	DNA ligase 1 (.1)		Lus10016149 [exp]	10.2	0.9031
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10024525 [exp]	11.6	0.8780
AT2G04235			unknown protein		Lus10025175 [exp]	15.1	0.9053
AT1G05910			cell division cycle protein 48...		Lus10027038 [exp]	15.5	0.8869
AT4G38890			FMN-linked oxidoreductases sup...		Lus10035460 [exp]	16.4	0.8971
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10022044 [exp]	17.0	0.9024
AT5G20170			RNA polymerase II transcriptio...		Lus10019427 [exp]	22.9	0.8730

Compare expression of checked genes

Lus10024381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.