Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02230 389 / 4e-137 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G59480 345 / 8e-120 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G59490 296 / 9e-101 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G62040 273 / 9e-92 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G32150 235 / 1e-76 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010848 [exp] 582 / 0 AT5G02230 394 / 7e-139 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10028107 [exp] 416 / 1e-147 AT5G02230 369 / 4e-129 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10004971 [exp] 332 / 1e-114 AT5G59480 392 / 1e-138 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10016518 [exp] 326 / 5e-112 AT5G59480 383 / 5e-135 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10040786 [exp] 327 / 8e-112 AT5G59480 382 / 4e-134 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10009256 [exp] 277 / 3e-93 AT3G62040 364 / 1e-128 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10038016 [exp] 276 / 4e-92 AT3G62040 363 / 6e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10001574 [exp] 267 / 6e-87 AT5G59480 323 / 4e-109 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10004914 [exp] 237 / 2e-77 AT2G32150 338 / 6e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G086900 [exp] 479 / 2e-172 AT5G02230 402 / 4e-142 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.009G033500 [exp] 338 / 7e-116 AT5G59480 361 / 4e-125 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.001G242300 [exp] 319 / 2e-109 AT5G59480 409 / 2e-145 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.002G185300 [exp] 289 / 3e-97 AT3G62040 360 / 5e-126 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.014G110800 [exp] 284 / 1e-95 AT3G62040 356 / 8e-125 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G089300 [exp] 239 / 2e-78 AT2G32150 317 / 9e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.008G151700 [exp] 231 / 2e-75 AT2G32150 319 / 2e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024382 pacid=23174965 polypeptide=Lus10024382 locus=Lus10024382.g ID=Lus10024382.BGIv1.0 annot-version=v1.0 ATGGAATATGAGAAGTGCTACCTTCAAGTCCAGAGGCCGAAATATGACTGCCTTCTATTCGACCTAGATGATACCCTTTACCCATACAGCTCTGGTCTTG CAGCCTCATGCGGGAAGAACATCAAAGATTACATGGTGGAACACTTGGGCATTGACAGGAACAAAATTGCCGAGTTGGGCAATCTTCTGTACAAAAACTA CGGCACGACAATGGCCGGTCTGAGGGCTATTGGCTACGATTTTGATTACGACGAGTACCATAGCTTTGTTCATGGCAAATTACCTTATGAGAACCTGAAG CCAGACCCAGTTCTCAGGAGCCTCCTGCTGAGCCTTCCATTTCGCAAAGTGATATTTACAAATGCGGACAAAATCCATGCCCTGAAGGCCTTAAACTTGC TTGGATTAGAGGATTGTTTCGAAGGGATAATTTGCTTCGAGACGCTTAATCCCATCCACAAAACCACTGTTTCTGATGACGAGGATGATATCGCTTTTGT GGGGTCAAACTCTTCAGCCGCCACAACAACAATTACAAACAACAACCATGAATTATTCGACATTATTGCCCACTTTAACAAGCCTAATCCCAGTACTTCC GTGCTTCCCAAGTCACCCATTGTGTGCAAGCCATCTGAGGCCGCCATTGAACGCGCCCTCAACATAGCTAACATCGATCCCAAGCGGACCCTGTTCTTCG AAGATAGCGTGAGGAACATTCAATCGGGAAAACGCGTGGGACTTGATACCGTGCTGATCGGGACTTCCCAGAGGGCTAAAGGTGCGGATTATGCTTTGGA GAGCATCCACAATCTGAGGGAAGCGATTCCGGAGTTGTGGGAACTAGCCGACATTAAAACAGCATCGTCGGAAGTTGGGTATCCTGGAAAAGTTGCAGTT GAGCAATCTGTCACAGCTTAA
AA sequence Show only first row Show all	>Lus10024382 pacid=23174965 polypeptide=Lus10024382 locus=Lus10024382.g ID=Lus10024382.BGIv1.0 annot-version=v1.0 MEYEKCYLQVQRPKYDCLLFDLDDTLYPYSSGLAASCGKNIKDYMVEHLGIDRNKIAELGNLLYKNYGTTMAGLRAIGYDFDYDEYHSFVHGKLPYENLK PDPVLRSLLLSLPFRKVIFTNADKIHALKALNLLGLEDCFEGIICFETLNPIHKTTVSDDEDDIAFVGSNSSAATTTITNNNHELFDIIAHFNKPNPSTS VLPKSPIVCKPSEAAIERALNIANIDPKRTLFFEDSVRNIQSGKRVGLDTVLIGTSQRAKGADYALESIHNLREAIPELWELADIKTASSEVGYPGKVAV EQSVTA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02230			Haloacid dehalogenase-like hyd...		Lus10024382 [exp]	0	1
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10033392 [exp]	4.1	0.9137
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Lus10010113 [exp]	6.0	0.8998
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10039599 [exp]	13.6	0.9134
AT5G58630			unknown protein		Lus10040661 [exp]	16.7	0.8973
AT3G54850		ATPUB14	plant U-box 14 (.1)		Lus10037970 [exp]	17.2	0.9072
AT2G20080			unknown protein		Lus10012982 [exp]	19.4	0.8957
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10027429 [exp]	20.4	0.8822
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034847 [exp]	23.9	0.9125
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10012436 [exp]	30.6	0.8701
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10016461 [exp]	31.2	0.9010

Compare expression of checked genes

Lus10024382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.