Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37660 416 / 4e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02240 388 / 5e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G31530 86 / 6e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G34460 71 / 5e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G18890 68 / 2e-12 AtTic62 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G16720 54 / 7e-08 HCF173 high chlorophyll fluorescence phenotype 173 (.1) AT1G15950 45 / 3e-05 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010846 [exp] 498 / 2e-179 AT2G37660 451 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022420 [exp] 82 / 3e-17 AT4G31530 415 / 4e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10009715 [exp] 79 / 1e-16 AT4G31530 408 / 1e-144 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040884 [exp] 71 / 7e-14 AT2G34460 401 / 7e-142 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004936 [exp] 69 / 5e-13 AT2G34460 399 / 4e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10042346 [exp] 68 / 3e-12 AT3G18890 483 / 2e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026321 [exp] 66 / 1e-11 AT3G18890 479 / 6e-163 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10033322 [exp] 55 / 4e-08 AT1G16720 874 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Lus10034781 [exp] 55 / 5e-08 AT1G16720 870 / 0.0 high chlorophyll fluorescence phenotype 173 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G086800 [exp] 436 / 6e-155 AT2G37660 450 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G253900 [exp] 71 / 1e-13 AT4G31530 399 / 1e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G150300 [exp] 70 / 4e-13 AT3G18890 481 / 1e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.T124404 [exp] 69 / 8e-13 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G111323 [exp] 69 / 8e-13 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.014G000400 [exp] 55 / 3e-08 AT1G16720 863 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Potri.007G003500 [exp] 53 / 1e-07 AT1G16720 852 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Potri.003G063800 [exp] 49 / 3e-06 AT1G72640 348 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.001G045600 [exp] 44 / 3e-05 AT1G15950 227 / 4e-75 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.004G183100 [exp] 43 / 0.0002 AT4G35250 650 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01073 [flax] [poplar] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family
Representative CDS sequence Show only first row Show all	>Lus10024383 pacid=23174878 polypeptide=Lus10024383 locus=Lus10024383.g ID=Lus10024383.BGIv1.0 annot-version=v1.0 ATGACGTGTCTCCCTTTGATCTCCTTCTCTGCTAAACTCGGTGGCGTGTCCTCATTACTGCCTAGTTCCAGTTGTTGCTCTACACTTCCAGAGTCTTCCG CACTTCCCTTCTCGCCCTCTCTTTCTGCTTCTTCGACATCGCGGACTACAGGCAGCAGCAGAAGGGCGAGATTCGGTGTTGCGTTTGCATCAATGGCCCC CAAGACCGTCCTCGTCACCGGAGCTGGTGGCAGAACCGGTTCAATAGTGTACAAGAAACTGAAGGAGAGGTCGGATCATTACACTGCAAGGGGTTTGGTT CGAACTCCAGAGAGTAAGGAGAAAGTTGGGGGATCTGATGATGTGTACGTTGGAGACGTAAGAGACGCTGAGAGCATTGTTCCAGCTATTCAAGGTATTG ATGCACTCGTGATACTGACAAGCGCAGTGCCTAAGATGAAACCTGGGTTTGATCCCTCCAAAGGTGAAAGGCCTGAATTTTATTTTGAAGAAGGTTCCTT TCCTGAACAGGTCGACTGGATTGGACAGAAGAACCAAATAGATGCTGCCAAGGCTGCTGGAGTGAAGCAAATTGTGTTGGTTGGTTCTATGGGTGGAACC AACCTAGATCACCCATTGAACAAATTGGGCAATGGGAACATACTGGTCTGGAAGAGAAAGGCTGAGCAATATCTGGCTGATTCTGGTCTTCCTTACACAA TCATAAGGGCTGGAGGGCTGCAAGACAAAGAAGGAGGGATTCGTGAGCTTCTGATCGGGAAGGATGACGAGCTTCTTCAGACAGAGACAAGGACCATAGC CAGGCCTGATGTTGCTGAAGTGTGCCTTCAGGCTCTCCAGTACGATGAAGCTCAGTTCAAGGCATTTGATTTGGCCTCGAAGCCGGAAGGAACAGGCACC CCAACCACCGACTTCAAGGCATTGTTCTCTCAGATCACCACCCGGTTTTGA
AA sequence Show only first row Show all	>Lus10024383 pacid=23174878 polypeptide=Lus10024383 locus=Lus10024383.g ID=Lus10024383.BGIv1.0 annot-version=v1.0 MTCLPLISFSAKLGGVSSLLPSSSCCSTLPESSALPFSPSLSASSTSRTTGSSRRARFGVAFASMAPKTVLVTGAGGRTGSIVYKKLKERSDHYTARGLV RTPESKEKVGGSDDVYVGDVRDAESIVPAIQGIDALVILTSAVPKMKPGFDPSKGERPEFYFEEGSFPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGT NLDHPLNKLGNGNILVWKRKAEQYLADSGLPYTIIRAGGLQDKEGGIRELLIGKDDELLQTETRTIARPDVAEVCLQALQYDEAQFKAFDLASKPEGTGT PTTDFKALFSQITTRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37660			NAD(P)-binding Rossmann-fold s...		Lus10024383 [exp]	0	1
AT2G22170			Lipase/lipooxygenase, PLAT/LH2...		Lus10006497 [exp]	3.9	0.7540
AT5G40510			Sucrase/ferredoxin-like family...		Lus10002520 [exp]	4.9	0.7377
AT2G44650		CHL-CPN10	chloroplast chaperonin 10 (.1)		Lus10043345 [exp]	7.3	0.7432
AT3G12260			LYR family of Fe/S cluster bio...		Lus10008661 [exp]	7.5	0.7237
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Lus10013607 [exp]	7.9	0.7446
AT3G57990			unknown protein		Lus10016270 [exp]	8.4	0.6932
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Lus10021244 [exp]	8.8	0.7237
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10009072 [exp]	13.2	0.6465
AT3G62820			Plant invertase/pectin methyle...		Lus10007873 [exp]	16.6	0.7294
AT5G16450			Ribonuclease E inhibitor RraA/...		Lus10026835 [exp]	16.7	0.7187

Compare expression of checked genes

Lus10024383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.