Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46590 300 / 7e-94 ATTRP2, TRFL1 TRF-like 1 (.1.2.3) AT1G07540 301 / 2e-93 MYB TRFL2 TRF-like 2 (.1) AT3G12560 295 / 3e-91 ATTBP2, TRFL9 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) AT5G13820 288 / 3e-88 HPPBF-1, ATTBP1, ATBP-1, ATBP1, TBP1 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) AT5G59430 265 / 3e-80 ATTRP1 TELOMERE REPEAT BINDING PROTEIN 1, telomeric repeat binding protein 1 (.1.2.3.4) AT3G53790 242 / 5e-74 MYB TRFL4 TRF-like 4 (.1) AT1G17460 63 / 4e-10 MYB TRFL3 TRF-like 3 (.1.2) AT1G72650 59 / 7e-09 MYB TRFL6 TRF-like 6 (.1.2) AT2G37025 53 / 5e-07 TRFL8 TRF-like 8 (.1.2) AT1G72740 44 / 0.0002 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010844 [exp] 1178 / 0 AT1G07540 308 / 7e-97 TRF-like 2 (.1) Lus10002704 [exp] 303 / 3e-93 AT5G13820 471 / 4e-158 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10016527 [exp] 301 / 4e-93 AT3G46590 388 / 1e-127 TRF-like 1 (.1.2.3) Lus10040795 [exp] 301 / 4e-93 AT1G07540 400 / 1e-132 TRF-like 2 (.1) Lus10000947 [exp] 302 / 8e-93 AT5G13820 455 / 5e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10040285 [exp] 288 / 1e-87 AT5G13820 456 / 1e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10023406 [exp] 229 / 5e-66 AT5G13820 392 / 5e-128 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10013809 [exp] 56 / 4e-09 AT2G37025 97 / 3e-24 TRF-like 8 (.1.2) Lus10020771 [exp] 58 / 2e-08 AT5G58340 70 / 1e-12 myb-like HTH transcriptional regulator family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G086500 [exp] 532 / 0 AT1G07540 370 / 2e-119 TRF-like 2 (.1) Potri.001G241600 [exp] 362 / 1e-115 AT1G07540 375 / 6e-121 TRF-like 2 (.1) Potri.009G032000 [exp] 361 / 1e-115 AT1G07540 485 / 7e-164 TRF-like 2 (.1) Potri.010G202400 [exp] 341 / 1e-107 AT3G12560 461 / 1e-154 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) Potri.008G057300 [exp] 338 / 1e-106 AT5G13820 427 / 8e-141 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Potri.003G063700 [exp] 62 / 7e-10 AT1G72650 333 / 7e-106 TRF-like 6 (.1.2) Potri.001G170200 [exp] 59 / 6e-09 AT1G72650 399 / 5e-131 TRF-like 6 (.1.2) Potri.006G126300 [exp] 54 / 3e-07 AT2G37025 120 / 2e-29 TRF-like 8 (.1.2) Potri.013G154500 [exp] 49 / 1e-05 AT5G58340 88 / 4e-18 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024385 pacid=23174961 polypeptide=Lus10024385 locus=Lus10024385.g ID=Lus10024385.BGIv1.0 annot-version=v1.0 ATGGTAGTGGAGAGGAGGCTGGAATGTGGTTTCGGTGGCTACAGAGTCCCCGTCGTGGTTCCTCGTGCAGCTAGATCAAATCGGGGAAGGGGACTAATAA GGAAGAAAGGAGAAAACAGTCATATACGCGCATTTGAAATCCTAGCTAGTGTTGCTGGCAAAATATTGCAGGGTGGTGAAAGTTCTACAAAACTGTCGCA GGGCGATGATGAAGGAGAATTATCGAACCCGGACGCTTCTGTAGAGAAAATTACCTCTCCCTCAGAGCCTGGTTTGAACAGCTATCCACTCCATGAATTC TTGCCAGCTCAGCAGACGTATAGTCACAAGGGAAGCTCAAGTTCCTATAATCTTGATCATGAAGCTGAGAACTTGGCCACCCGGGATGATGGTAAAATGA CTAACCGAACCATTTCGGATAAACTGGATGGATGGAAACTTTATCAAGGCCAAGATGAGAGCCTGACCGAGATAAAGCCTGAAACTGCTGAAACTGAGTG CAAGGTCAAAAGTACTGAGAGTGGGACTTTACCGGTGCAAGGCGATTTTGAGGACAAAATCGAAATCGACATGAACATTCCAGCATGTGCAAGCCCTGAC GAGAACAACGATACAAAGCCGTCTTTGTTCAAGAACTGCATTGGTCTAGGGTGCTTCTCCGGGCGCTCTGCTGAGACGAAAGTAGTAGTTAGTAGAGATG ATGACGATGACGAAAATGCCAGTGGATGCTCTGAACATGTGCAGCAGCAGCAGTCATGTAACGGAGTCCAGAAGACGAGGAACTCATCTGTGCTGAGGCA TTGGCGGGTGTCTGCCAACTCGAAGATCGGTGGATTCTTCAGAAATGATGGAAAGACACCAAAAGGAACTTCTAACCAAAGTGGGAAGTCCTGTTCTAAT AATCAGCAAAAAGCTCAGAAGATTGTACCTTTCAAGAAAAGGAAGTTCTTCGCGTGTGACGATGCATCCGTTTGTGAAGACATATTCACTTCTCCCAACA AGAAAACCAATGATGACAGCTGTGGTTCAGCGTCGGGAACATCATCTTCGGTATCAGGCCAACATACGCCTCCAAACTCGAGAGACTGTAATGTCAAGCT TAGTATCAAGTCGTTCAAGGTCCCGGAGCTCTTCATTGAGATTCCTGCAACAGCAACCGTTGGTTCATTGAAGACGATGGTAATGGAGGCAGTATCTGCC ATCCTTGGCGATGGACTACATGTTGGCATCCTGGTTCAGGGAAAGAAGGTTAGAGATGACAGCAAAACCTTGCTTCAGACTGGAATCTCCCAAGATCATG ACAAGCATAACAGTTTGGGCTTTGTTTTGGAGCCGTGCCGATCTCAAATAGCATCTTCGTCGCCTTCCTGTGCTCAGACTCCCTCATTTCTGTTGAGCCG TTCAGCTAATGGCGCGCCATCCAGGCATGCCTCATTGAAGCTACAACAAGCAGGGGGATCAAGTGGCTCTCCTGTTTCGTTGGAGATCGGTTATGGCAGG ACTGTTGGAAGTAATCCAAGCAGAGTTCTCGCACTGGGTGATGGCCGATCAAACAACGATAGAGCCAACTTATCTGATTCGAAAGCTTTGGTGACAGTCC CACCAGTGAGAATGGATCATGCATTGGCTGTAGTCCCTTTCCACAGGAAGTCTGGTCAGCCCGAGCTAGGACAACGCAGGATGAGAAGACCCTTTTCGGT CTCGGAAGTGGAAGCACTGGTTCAAGCAGTTGAAAAGCTCGGAACTGGAAGGTGGCGTGATGTGAAGTTGCGTGCTTTCGATAATGTGCATCATCGAACT TATGTTGATCTCAAGGATAAGTGGAAGACATTAGTGCATACAGCAAGGATATCCCCACAGCAAAGAAGAGGGGAGCCAGTGCCACAAGAACTACTGGACA GGGTTCTTGCTGCACATGCTTACTGGTCACAGCAACAGCCCAAACACCATCCCAACTCTACTGTTTGA
AA sequence Show only first row Show all	>Lus10024385 pacid=23174961 polypeptide=Lus10024385 locus=Lus10024385.g ID=Lus10024385.BGIv1.0 annot-version=v1.0 MVVERRLECGFGGYRVPVVVPRAARSNRGRGLIRKKGENSHIRAFEILASVAGKILQGGESSTKLSQGDDEGELSNPDASVEKITSPSEPGLNSYPLHEF LPAQQTYSHKGSSSSYNLDHEAENLATRDDGKMTNRTISDKLDGWKLYQGQDESLTEIKPETAETECKVKSTESGTLPVQGDFEDKIEIDMNIPACASPD ENNDTKPSLFKNCIGLGCFSGRSAETKVVVSRDDDDDENASGCSEHVQQQQSCNGVQKTRNSSVLRHWRVSANSKIGGFFRNDGKTPKGTSNQSGKSCSN NQQKAQKIVPFKKRKFFACDDASVCEDIFTSPNKKTNDDSCGSASGTSSSVSGQHTPPNSRDCNVKLSIKSFKVPELFIEIPATATVGSLKTMVMEAVSA ILGDGLHVGILVQGKKVRDDSKTLLQTGISQDHDKHNSLGFVLEPCRSQIASSSPSCAQTPSFLLSRSANGAPSRHASLKLQQAGGSSGSPVSLEIGYGR TVGSNPSRVLALGDGRSNNDRANLSDSKALVTVPPVRMDHALAVVPFHRKSGQPELGQRRMRRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFDNVHHRT YVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWSQQQPKHHPNSTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10024385 [exp]	0	1
AT2G12400			unknown protein		Lus10008813 [exp]	3.2	0.9138
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10039079 [exp]	3.7	0.8838
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10037055 [exp]	6.2	0.8654
AT2G35260			unknown protein		Lus10030958 [exp]	6.5	0.9119
AT1G49380			cytochrome c biogenesis protei...		Lus10011311 [exp]	6.5	0.9125
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Lus10016011 [exp]	6.6	0.8614
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10010844 [exp]	7.3	0.8909
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10023530 [exp]	10.4	0.8551
AT1G54520			unknown protein		Lus10015939 [exp]	11.7	0.9085
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10006386 [exp]	12.0	0.8871

Compare expression of checked genes

Lus10024385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.