Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02250 976 / 0 ATMTRNASEII, RNR1, EMB2730 ribonucleotide reductase 1, EMBRYO DEFECTIVE 2730, ARABIDOPSIS THALIANA MITOCHONDRIAL RNASE II, Ribonuclease II/R family protein (.1) AT2G17510 91 / 2e-18 EMB2763 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) AT1G77680 56 / 1e-07 Ribonuclease II/R family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010842 [exp] 269 / 1e-85 AT5G02250 241 / 6e-76 ribonucleotide reductase 1, EMBRYO DEFECTIVE 2730, ARABIDOPSIS THALIANA MITOCHONDRIAL RNASE II, Ribonuclease II/R family protein (.1) Lus10029500 [exp] 77 / 4e-14 AT2G17510 1543 / 0.0 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) Lus10025614 [exp] 59 / 2e-08 AT1G77680 1048 / 0.0 Ribonuclease II/R family protein (.1) Lus10014833 [exp] 58 / 4e-08 AT1G77680 1033 / 0.0 Ribonuclease II/R family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G086200 [exp] 1061 / 0 AT5G02250 1085 / 0.0 ribonucleotide reductase 1, EMBRYO DEFECTIVE 2730, ARABIDOPSIS THALIANA MITOCHONDRIAL RNASE II, Ribonuclease II/R family protein (.1) Potri.007G059100 [exp] 76 / 6e-14 AT2G17510 1546 / 0.0 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) Potri.005G174800 [exp] 64 / 5e-10 AT1G77680 1078 / 0.0 Ribonuclease II/R family protein (.1) Potri.002G086400 [exp] 62 / 2e-09 AT1G77680 1062 / 0.0 Ribonuclease II/R family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00773 [flax] [poplar] RNB RNB domain
Representative CDS sequence Show only first row Show all	>Lus10024387 pacid=23175023 polypeptide=Lus10024387 locus=Lus10024387.g ID=Lus10024387.BGIv1.0 annot-version=v1.0 ATGATGACAGTCCGAGCAGTTAACAGCTGCTATCTCCTTCGCTCTGGTTCTCCGCCGTCGCTATCAGCTTTCCGTTGCCGTTTCAACAATTCGAGGAGCT TGGACTTGTCCCGCTGCTGCGTATTTCGGTTCCCGATGCTTCGCGGCGAGCTGGTGAACTTTTCTCATGGAGGCGTTCGGAGTTGCTGCTTCAACAGCCT CCTTGAAAGCGCCATGGAAGCGCTCGCCGCCTATGGCAAACGCAGGAGAGCTGCTCCCGCTGCTGCAGTGAAATTAACTAGCAGTGGGGAGCTTCTCGAT GATAAGCCTCTCAACCAAACACTCAAGAAAGGACTCCTGCTGGAGTTCAAGAAGGATTCGGATAGATTACTCCTGGCAGTGGCACAGAAACCAGATGGAA AGAAGAATTGGATGGTGTACGATCAGAATGGAACTACATCCTCAATTAAACCCCAACAGATTACATACATTGTCCCTGGGATTGAAAATTTTGATCACAC AGAACTCTCTAGCTTTATTCAGAGAGCTGAAGATAACTTGGATCCATCCCTTCTTGAGTTTGCTTGGGCTGAGCTTCTTGAAGCGAATAAGTCTGTGACA CCAGAAGGACTAGCAGAGATGATTTTTGGTAGTCCAGAGCCGATTGAGATCTATTGTGCACATCTTCTGCTAACAAGAGATAGTTTGTACTTTACTGTAC GGGAGATTAAAGGCTGTCGCCCCCTGTATATACCCCGAACTACTGAACAGGTCGAGGAACTTACACGTAAGAAGCTTGCAAAAGAAGCAGCTGAACGTGA ACTGGACGAGTTCGTACAACTGCTGAAATCTGCCAAGGCAATGCCTTCACATGCTAAGCCTCCCAAATCTTCATGGATGGTTGAAGAGAAAATCCTATGC AAAATTCAGTCCATTGAGGCTTATGCTATTGATGGATATACGAGTGATGACCAAAAGAATACTGCAGGGGAGATCCTCAGGTCAATGGGAATGTCGAAAA CATCCTCATCTGCTTTTAATCTCCTCATTGCAATTGGTTATTTTCCTGTCCATGTCAATCTTGAATTGTTGAAATTGAACATCCGTACTGATCATTCCAA GGAGATGATTTTGGCTGCTGAAAATATTCTGTCAGAGCATGCTGACCCAGACGAGTTTGAAAGGAAAGATCTTACTCACCTGAAGGTATATGCCATCGAC GTTGATGATGCTGATGAGCTTGATGATGCTCTGAGTGCAACAAGGTTACTGGATGGTCGTATCAGAGTGTGGATACATGTTGCAGATGCTACTCGATATG TAGAGCCTGGAAGTGCTCTAGACAGGGAGGCCATGATAAGGGGAACTTCTGTTTTCTTGCCAACTGCTACTTATTCTATGTTCCCAGAGAAGCTTGCCAT GCAAGGAATGAGTATGAAACAAGGTGAAATTTGTGATGCTGTTACAGTATCAGTTGTGCTTAATTCTGATGGAAGCATTGGTGAATACTCGGTGGATAAT TCGATCATCAAACCTACCTACATGCTGACTTATGAAAGTGCATCAGAGCTACTTAATTTGAACCTGGAAGAGGAGGCAGAATTAAGAATCCTTTCTGAGG CTGCAGCTCTGCGGCGTAGTTGGCGTCGCCAGCAGGGTGCAGTCGACACAACAAATATAGAAACTCGAATTAAAGTTGTTAACCCTGATGATCCAGAGCC GATAATCAACCTCTATGTTGAAAATCAAGCCGACCGTGCAATGAGACTCGTCACTGAGATGATGATACTGTGTGGAGAAGTTATAGCAACCTTTGGATCC CAGAACAACATTCCTCTGCCCTATCGAGGACAGCCTCAGTCAAATATTGACGTGTCTGCATTTTCACATCTTCCTGAAGGGCCTGTTAGGACTTCTGCCA TTATTAAAATTTTGCGCGCTGCAGAAATCGACTTCAGGAAGCCAATACGACATGGAATTTTGGGGCTTCCCGGTTATGTTCAGTTTACTTCGCCCATTCG TAGATACCTTGATCTGCTTGCGCATTATCAGATCAAAGCATTTATCCGAGGAGATTCTCCTCCTTTCTCAGCAGGTCAGTTGGAAGGAGCTGCAGCCACA GTAAATATGCAGACCCGTTTAGCAAGAAAGCTCAGCAATACCAGTCTTCGGTATTGGATAATTGAATACCTCAGAAGACAACCAAAGGAGAGAAGATACC AGGCTGTGATTCTTAGATTCATTAAAGATCGGTTTGCAGCCTTGCTATTACTAGATGTAATTGCTGCTTCTGCAACTTGCTTTGTAATTGCGTCTCTTAT GGAAGTAAACACGTTTTTGACTATTTTGAATTTGATGACACAGATTGGGTTTCAAGCATCAGCATGGGTATCCACCGGATCCGTAGGAGATGAGGTGAGA GTAAAGGTAGAAGAAGCTCGCCCGCGGGAGGATCTTATTTCTTTCAAGGAGGTTGCAATGTGA
AA sequence Show only first row Show all	>Lus10024387 pacid=23175023 polypeptide=Lus10024387 locus=Lus10024387.g ID=Lus10024387.BGIv1.0 annot-version=v1.0 MMTVRAVNSCYLLRSGSPPSLSAFRCRFNNSRSLDLSRCCVFRFPMLRGELVNFSHGGVRSCCFNSLLESAMEALAAYGKRRRAAPAAAVKLTSSGELLD DKPLNQTLKKGLLLEFKKDSDRLLLAVAQKPDGKKNWMVYDQNGTTSSIKPQQITYIVPGIENFDHTELSSFIQRAEDNLDPSLLEFAWAELLEANKSVT PEGLAEMIFGSPEPIEIYCAHLLLTRDSLYFTVREIKGCRPLYIPRTTEQVEELTRKKLAKEAAERELDEFVQLLKSAKAMPSHAKPPKSSWMVEEKILC KIQSIEAYAIDGYTSDDQKNTAGEILRSMGMSKTSSSAFNLLIAIGYFPVHVNLELLKLNIRTDHSKEMILAAENILSEHADPDEFERKDLTHLKVYAID VDDADELDDALSATRLLDGRIRVWIHVADATRYVEPGSALDREAMIRGTSVFLPTATYSMFPEKLAMQGMSMKQGEICDAVTVSVVLNSDGSIGEYSVDN SIIKPTYMLTYESASELLNLNLEEEAELRILSEAAALRRSWRRQQGAVDTTNIETRIKVVNPDDPEPIINLYVENQADRAMRLVTEMMILCGEVIATFGS QNNIPLPYRGQPQSNIDVSAFSHLPEGPVRTSAIIKILRAAEIDFRKPIRHGILGLPGYVQFTSPIRRYLDLLAHYQIKAFIRGDSPPFSAGQLEGAAAT VNMQTRLARKLSNTSLRYWIIEYLRRQPKERRYQAVILRFIKDRFAALLLLDVIAASATCFVIASLMEVNTFLTILNLMTQIGFQASAWVSTGSVGDEVR VKVEEARPREDLISFKEVAM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Lus10024387 [exp]	0	1
AT5G54090			DNA mismatch repair protein Mu...		Lus10032917 [exp]	1.4	0.9089
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Lus10022174 [exp]	2.4	0.8682
AT2G45700			sterile alpha motif (SAM) doma...		Lus10038078 [exp]	4.0	0.8983
AT5G42390		SPP	stromal processing peptidase, ...		Lus10041263 [exp]	4.9	0.8654
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Lus10020879 [exp]	11.2	0.8774
AT1G76050			Pseudouridine synthase family ...		Lus10017250 [exp]	11.7	0.8779
AT4G31210			DNA topoisomerase, type IA, co...		Lus10020186 [exp]	12.6	0.8785
AT5G54090			DNA mismatch repair protein Mu...		Lus10015589 [exp]	13.9	0.8581
AT1G73970			unknown protein		Lus10036972 [exp]	16.2	0.8357
AT5G09580			unknown protein		Lus10020476 [exp]	17.4	0.7690

Compare expression of checked genes

Lus10024387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.