Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12560 60 / 9e-10 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G16210 59 / 2e-09 F-box family protein (.1) AT1G47790 57 / 8e-09 F-box and associated interaction domains-containing protein (.1) AT3G23880 54 / 6e-08 F-box and associated interaction domains-containing protein (.1) AT3G06240 51 / 6e-07 F-box family protein (.1) AT3G23260 49 / 3e-06 F-box and associated interaction domains-containing protein (.1) AT4G22390 44 / 0.0001 F-box associated ubiquitination effector family protein (.1) AT1G12870 44 / 0.0002 F-box and associated interaction domains-containing protein (.1) AT1G54640 41 / 0.0005 F-box family protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007040 [exp] 277 / 1e-90 AT3G06240 86 / 4e-18 F-box family protein (.1) Lus10011015 [exp] 265 / 3e-85 AT3G06240 94 / 7e-21 F-box family protein (.1) Lus10006697 [exp] 258 / 1e-82 AT4G12560 80 / 4e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10006687 [exp] 225 / 2e-71 AT4G12560 81 / 5e-17 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10038541 [exp] 91 / 3e-22 AT3G52320 45 / 2e-06 F-box and associated interaction domains-containing protein (.1) Lus10038606 [exp] 76 / 6e-15 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10032343 [exp] 67 / 2e-12 AT1G07700 218 / 9e-71 Thioredoxin superfamily protein (.1.2.3) Lus10013873 [exp] 67 / 6e-12 AT3G06240 104 / 2e-24 F-box family protein (.1) Lus10037892 [exp] 66 / 7e-12 AT3G06240 107 / 7e-26 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G012900 [exp] 77 / 9e-16 AT4G12560 144 / 2e-39 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G014300 [exp] 71 / 2e-13 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.015G013500 [exp] 70 / 4e-13 AT4G10190 70 / 4e-13 F-box and associated interaction domains-containing protein (.1) Potri.015G013800 [exp] 70 / 4e-13 AT4G12560 105 / 7e-25 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G035500 [exp] 69 / 1e-12 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013000 [exp] 68 / 2e-12 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318400 [exp] 68 / 2e-12 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.008G199800 [exp] 66 / 8e-12 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1) Potri.017G058900 [exp] 64 / 2e-11 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.001G318300 [exp] 64 / 5e-11 AT3G06240 140 / 7e-38 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024389 pacid=23174933 polypeptide=Lus10024389 locus=Lus10024389.g ID=Lus10024389.BGIv1.0 annot-version=v1.0 ATGGAGGTCCAAAACTTAGAGAAGAAGAGAAAACAAGCATGGCGGGAGACTAGATATGCAGGATTATCTTTCTTACTAGAGGAGATAGTGGTGGACATCT TGGTGAAACTTCCGGTGAAGAGTCTTCTACGATTCAAGTGCTTGTCCACCGGCCTTCACAATGTCACTCGAACCCCTTATTTGGTGGCTGCACACGCAGA ACATCAGCGCAAGAATCATACTGGCATCTTCGTCCTCAATTATAAGGATGGGGATATGGAGTTGGAAAGCAGGGATGTTGGCACCGGAATCGCGGATAAT AAGAGATTCACGGATGCTAGTATTAGTAATCTAGAAAATATGCTTCTCTGGAATCCAGCCACCACTAAGTTCAGCTTTGCTCCTCTTCCCATGATTCCCT GTAGAAGCATAATGCTTCATGGATTTGGGTACGATTCTGTGTCCCGCGATTACAAGACCGTCCGGATGATCATAAGCCTGCAGCAGGTTGTTCCAGCCGA AGCAGAGGTTCTGAGTTGGGGGAGAAAGAGCTGGACAAAGCTCAACCTCGAAAAACAGAGCTGCTTGGAGGAAGTCAACGGAGTCGTAACCCATGCAATA ACCAGCAAAGGCAGAGTGAATTGGATGGTTGGTACAACTACTACTGATTCATGTATGATGCTTTCCTTCAAACTCGGCCGAGAGAAATTCGAGTTAATAT CGCCACCACTAGAAAACTACGATTGCTGTGATTATGCTGCGGGGCCATGCGTTTGGAAAGGATCTCTTTGCATGCTCGTTAAGCAAGGCTGGCGTGGTAC TCTTTGGCTGTTCCACGACGATGATGAGGATGATCGAGATCATTCATCTCGGTGGTCCAAACTGTTTACCTTCCAAACGGATTATCCTTACGAGGTGGTG AGCGCACTGGACCAGGGTGGCAACATCTGGAATTCGTTCTTGGCTAATGAATATGAAGATCGTTTTGCATTAGTTTTCATGGCATGGAAGCTCAGGTCTC GACTAGGTTATTATCGGATCCATAACTGCTTCAAGTTTGCACCGACATTGGTTCCAATCCCTGGCTCGAGTACTTAG
AA sequence Show only first row Show all	>Lus10024389 pacid=23174933 polypeptide=Lus10024389 locus=Lus10024389.g ID=Lus10024389.BGIv1.0 annot-version=v1.0 MEVQNLEKKRKQAWRETRYAGLSFLLEEIVVDILVKLPVKSLLRFKCLSTGLHNVTRTPYLVAAHAEHQRKNHTGIFVLNYKDGDMELESRDVGTGIADN KRFTDASISNLENMLLWNPATTKFSFAPLPMIPCRSIMLHGFGYDSVSRDYKTVRMIISLQQVVPAEAEVLSWGRKSWTKLNLEKQSCLEEVNGVVTHAI TSKGRVNWMVGTTTTDSCMMLSFKLGREKFELISPPLENYDCCDYAAGPCVWKGSLCMLVKQGWRGTLWLFHDDDEDDRDHSSRWSKLFTFQTDYPYEVV SALDQGGNIWNSFLANEYEDRFALVFMAWKLRSRLGYYRIHNCFKFAPTLVPIPGSST

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10024389 [exp]	0	1
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10018914 [exp]	1.0	0.8666
AT2G33980		ATNUDT22	nudix hydrolase homolog 22 (.1...		Lus10041965 [exp]	4.0	0.7654
AT5G04347			Plant self-incompatibility pro...		Lus10022824 [exp]	4.2	0.7542
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Lus10010453 [exp]	16.5	0.7337
					Lus10000363 [exp]	17.9	0.7333
					Lus10003285 [exp]	19.6	0.7333
					Lus10004996 [exp]	21.2	0.7333
AT4G30880			Bifunctional inhibitor/lipid-t...		Lus10019770 [exp]	22.6	0.7333
					Lus10025781 [exp]	24.0	0.7333
					Lus10027602 [exp]	25.3	0.7333

Compare expression of checked genes

Lus10024389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.